Locus 517

Sequence ID 3R_DroMel_CAF1
Location 1,911,763 – 1,911,866
Length 103
Max. P 0.986044
window828

overview

Window 8

Location 1,911,763 – 1,911,866
Length 103
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 75.00
Mean single sequence MFE -27.35
Consensus MFE -16.16
Energy contribution -19.47
Covariance contribution 3.31
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.59
SVM decision value 2.03
SVM RNA-class probability 0.986044
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1911763 103 - 27905053
UUAAGUGGCAGCAUAGCAGCUGAAAAAGUGGCACCGAUACUUGAAUCUUGCAUGUGCUGUGCUACACUG---AACAAAACUAGUCCAAAAUUCGUUACUUCUUUUG
..(((((((((((((((((((.....))).(((..(((......))).)))...)))))))))..((((---........)))).........)))))))...... ( -24.20)
>DroSec_CAF1 70307 106 - 1
UUAAGUGGCAGCAUAGCAGCUGAAAAAGUGGCACCGAUACUUGCAUCUUGCAUGUGCUGUGCUGCACUUGGAAAAAAAACCAAUUCAAAAUGAGUUAUUGCUUUUG
(((((((.((((((((((..((...(((..(((........)))..))).))..)))))))))))))))))..........(((((.....))))).......... ( -31.10)
>DroSim_CAF1 71097 95 - 1
UUAAGUGGCAGCAUAGCAGCUGAAAAAGUGGCACCGAUACUUGCAUCUUGCAUGUGCUGUGCUGCACUUGGAAAAAA-----------AAUGAGUUAUUGCUUUUG
(((((((.((((((((((..((...(((..(((........)))..))).))..)))))))))))))))))......-----------...((((....))))... ( -30.00)
>DroEre_CAF1 72371 84 - 1
UUAAGUGGCAGCAUAGCAGCAGAAAAAAU-------------GCAUCUUGCAUGU-----GCUGCACUGGGAA---AAACCGGACUGAAAUUAAUAAUUGCUUU-G
..((((.((((((((((((((.......)-------------))....))).)))-----))))).((((...---...))))................)))).-. ( -24.10)
>consensus
UUAAGUGGCAGCAUAGCAGCUGAAAAAGUGGCACCGAUACUUGCAUCUUGCAUGUGCUGUGCUGCACUGGGAAAAAAAACCAGUCCAAAAUGAGUUAUUGCUUUUG
.((((((.((((((((((((.((..(((((.......)))))...))..))...)))))))))))))))).................................... (-16.16 = -19.47 +   3.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:03 2006