Locus 516

Sequence ID 3R_DroMel_CAF1
Location 1,911,310 – 1,911,401
Length 91
Max. P 0.851368
window827

overview

Window 7

Location 1,911,310 – 1,911,401
Length 91
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 65.59
Mean single sequence MFE -19.34
Consensus MFE -7.40
Energy contribution -8.24
Covariance contribution 0.84
Combinations/Pair 1.23
Mean z-score -2.04
Structure conservation index 0.38
SVM decision value 0.79
SVM RNA-class probability 0.851368
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1911310 91 + 27905053
GCUCCGCAAAUGAAA-AGCCGGCAGAUGGAAAACCGGGCGG----UGUACUG-AGAAAAAAAGUUGAGCCAGUUAAGCG-AACUGAAAGAAUCGAAGA
((((.((........-..((((...........)))).(((----....)))-.........)).))))(((((.....-)))))............. ( -17.20)
>DroSim_CAF1 70754 90 + 1
GCUCCGCAAAUGAAA-AGCCGGCAGAUGGAAAACCAGGCAG----UGUACUG-AGAAAAA-AGUGGAGCAUGUUAGGCC-AACUGAAAGAAUCGAAGA
(((((((........-.(((((...........)).)))((----....)).-.......-.)))))))...((((...-..))))............ ( -19.70)
>DroEre_CAF1 71976 83 + 1
GCUCCGCAGAGGCAA----CGGCAAAUGGAAAACCAGGCUG----UGCACUG-ACAAA-AAAGUGGAGCACGUUGAACG-AUUAAAA----UCGAACA
(((((.(((..(((.----((((...(((....))).))))----))).)))-((...-...)))))))........((-((....)----))).... ( -26.00)
>DroYak_CAF1 75794 84 + 1
GCUCCGCAAAGGCAA----UGGCAAAUGGAAAACCAGGCUG----UGCACUGAACAAA-AAAGUGGAGCUAGUUGAACC-AAUUGAA----AGAAGAA
(((((((..(((((.----((((...(((....))).))))----))).)).......-...)))))))((((((...)-)))))..----....... ( -21.30)
>DroAna_CAF1 57835 87 + 1
GC---GUAAAAGAAGGAAACGGCAAAA-CAGCCCCAGGCUGUAAAUGUACUC-AAAAAAAAUUCUGAA--AAAUAAAUGUAAUUAAAUUAAU-GA---
..---.....(((((....).(((..(-(((((...))))))...)))....-........))))...--......................-..--- ( -12.50)
>consensus
GCUCCGCAAAGGAAA_A__CGGCAAAUGGAAAACCAGGCUG____UGUACUG_ACAAAAAAAGUGGAGCAAGUUAAACG_AAUUGAA__AAUCGAAGA
(((((((.............((...........))((((.......)).))...........)))))))............................. ( -7.40 =  -8.24 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:02 2006