| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,903,897 – 1,904,002 |
| Length | 105 |
| Max. P | 0.689935 |
| Location | 1,903,897 – 1,904,002 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 82.55 |
| Mean single sequence MFE | -30.97 |
| Consensus MFE | -18.92 |
| Energy contribution | -19.95 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.689935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1903897 105 + 27905053 AAAUUUCAAUUUGGGCGAAAGAAAAUCCACGCCAAGUAAAUUAGUCAAACUAUUGAUGUACUUGGAUAGUUCGCGAAAGCGACUUGAAGGACU------UUCAGAAGUACU ..(((((..(((....))).((((.(((...(((((((.((((((......)))))).))))))).(((.((((....)))).)))..))).)------))).)))))... ( -28.70) >DroSec_CAF1 62339 105 + 1 GAAUUCCAAUUUGGGCGCAAGAAAAUCCACGCCAAGUAAAUUGGUCAAACUAUUGAUGUACUUGGAUAGUUCGCGAAAGCGACUAGAGGGACU------CCCACGAGUACU .....((((((((((((............))))...))))))))((((....)))).(((((((..((((.(((....)))))))..(((...------))).))))))). ( -33.00) >DroSim_CAF1 63118 105 + 1 GAAUUCCAAUUUGGGCGCAAGAAAAUCCACGCCAAGUAAAUUGGUCAAACUAUUGAUGUACUUGGAUAGUUCGCGAAAGCGACUAGAAGGACU------CCCAGGAGUACU ..(((((....(((((....)....(((...(((((((.((..((......))..)).))))))).((((.(((....)))))))...)))..------)))))))))... ( -34.60) >DroEre_CAF1 64355 105 + 1 AAAUUCCAUUUUGGGCGCGAGGAAAUCCACGCCAAGUAAAUUGGUCAAACUAUUGAUGUACUGGGAUAGUUCGCGAAAGCGACUGGAAGGACU------CACAGGAACGCU ..(((((......((((...((....)).)))).((((.((..((......))..)).))))))))).((((((....))..(((((.....)------).)))))))... ( -29.40) >DroYak_CAF1 68214 105 + 1 AAAUUCCAUUUUGGGCGCAAGGAUAUCCACGCCAAGUAAAUUGGUCAAACUAUUGAUGUACUUAGAUAGUUCGCUAAAGCGACUAGAAGGUCU------CACAGGAGUGCU ..(((((......((((...((....)).))))(((((.((..((......))..)).)))))...((((.(((....)))))))........------....)))))... ( -25.00) >DroAna_CAF1 50751 111 + 1 AAAUUUCAAUACUGGGUCCAGAAUAUCCACGCCCAGCAAGUCUGUCCAACUGUUAAUAUACUUGGUUAGAUCGCAAAAGCGAUUUGCGGGAUUUGUUGACACAGGCUUGCU ............(((((...(.....)...)))))((((((((((......(((((((..((((..((((((((....))))))))))))...))))))))))))))))). ( -35.10) >consensus AAAUUCCAAUUUGGGCGCAAGAAAAUCCACGCCAAGUAAAUUGGUCAAACUAUUGAUGUACUUGGAUAGUUCGCGAAAGCGACUAGAAGGACU______CACAGGAGUACU ..(((((........(....)....(((...(((((((.((..((......))..)).))))))).(((.((((....)))))))...)))............)))))... (-18.92 = -19.95 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:56 2006