| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,900,487 – 1,900,593 |
| Length | 106 |
| Max. P | 0.647512 |
| Location | 1,900,487 – 1,900,593 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 77.22 |
| Mean single sequence MFE | -34.65 |
| Consensus MFE | -20.26 |
| Energy contribution | -20.27 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1900487 106 + 27905053 UGGGCCG-----GCAA---AGUGGGAAGCUCGAGUGUCAGUGAGUAUAAAAAUUCGCAUUUUAAUAUUUGCCAGUAAGCUGCGCUGCGCUGGCAGCUGAUUUGCCAUAGGUCCU- .((((((-----((((---(......(((..........((((((......))))))...........(((((((.(((...)))..))))))))))..))))))...))))).- ( -37.00) >DroVir_CAF1 67264 107 + 1 G---GCG-----GCGAGACAAGGCGAGGCGUAAAUGUCAGCGCGCAUAAAAAUUCGCAUUUUAAUAUUUGCCAGUAAGCUGCGCAGCCUUGGCAGCUGAUUUGCCAGAGCAGCAA .---(((-----((...((..((((((((((........))))((..........)).........)))))).))..)))))((.((.(((((((.....))))))).)).)).. ( -35.60) >DroPse_CAF1 45793 109 + 1 UGGGGCCGGGAUGGAG---AAUGG--GGCGCAAGUGUCAGCGAGCAUAAAAAUUCGCAUUUUAAUAUUUGCCAGUAAGCUGCACUGCGUUGGCAGCUGAUUUGCCAUAGGUCCC- .((((((...((((..---(((.(--(((....))....(((((........)))))..........(((((((...((......)).))))))))).)))..)))).))))))- ( -38.40) >DroWil_CAF1 54034 94 + 1 UG------------AA---GA--CGAGGCGCAAAUGUCAGAGCGCAUAAAAAUUCGCAUUUUAAUAUUUGCCAGUAAGCUGCACAGCGUUGGCAGCUGAUUUGCUAUAGCU---- ..------------..---..--...(((((((((((.((((.((..........)).)))).))))))))(((..((((((.(......)))))))...))).....)))---- ( -23.10) >DroMoj_CAF1 55620 110 + 1 GGGUGUG-----GCAAGGCGCGGCGAGGCGCAAAUGUCAGCGCGCAUAAAAAUUCGCAUUUUAAUAUUUGCCAGUAAGCUGCGCAGCGCUGGCAGCUGAUUUGCCCAGGCAGACG ((((.((-----((...((((......))))...(((((((((((..........))...........((((((....))).))))))))))))))))....))))......... ( -40.90) >DroAna_CAF1 47813 103 + 1 UGGG--------GGAA---AGUGGGAGGCUCAGAUGUCAGCGAGUAUAAAAAUUCGCAUUUUAAUAUUUGCCAGUAAGCGGCGCUGCGUUGGCAGCUGAUUUGCCAUAGGUCCU- ...(--------(((.---.((((.(((.((((.(((((((((((.(((((.......)))))......(((.......)))))).)))))))).))))))).))))...))))- ( -32.90) >consensus UGGGGCG_____GCAA___AAUGCGAGGCGCAAAUGUCAGCGAGCAUAAAAAUUCGCAUUUUAAUAUUUGCCAGUAAGCUGCGCAGCGUUGGCAGCUGAUUUGCCAUAGCUCCC_ ..........................((((.....((((((..((..........))...........((((((...((......)).)))))))))))).)))).......... (-20.26 = -20.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:54 2006