Locus 5098

Sequence ID 3R_DroMel_CAF1
Location 13,436,611 – 13,436,705
Length 94
Max. P 0.814072
window8308

overview

Window 8

Location 13,436,611 – 13,436,705
Length 94
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 64.51
Mean single sequence MFE -28.12
Consensus MFE -8.02
Energy contribution -10.80
Covariance contribution 2.78
Combinations/Pair 1.21
Mean z-score -2.18
Structure conservation index 0.29
SVM decision value 0.66
SVM RNA-class probability 0.814072
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13436611 94 - 27905053
UGGCUAUGGAGGCGGUGGCUAUGGAGGCAAUGGCUUCUUUGG---AAAGUAAAGA--UGCCAAAUCUU---GCCACCGGGAUAGUUAAGUAC-UUGUGAUUGA
(((((((.....(((((((...(((.....((((.((((((.---....))))))--.))))..))).---)))))))..))))))).....-.......... ( -29.30)
>DroPse_CAF1 17997 91 - 1
GGGCUACGGCGGCGGUGG------------GGGUUUCUUCGGUUAAACGUAAACCUCUGCUGAGGCUGUGAUCCAUCUGUCUAGUUAAGUGCCUUAUUAUUUG
((..((((((..(((..(------------((((((...((......)).)))))))..)))..))))))..))............................. ( -31.60)
>DroSec_CAF1 6224 75 - 1
UGGCU---------------AUGGAGGCAAUGGCUUCUUUGG---AAAGUAAAGA--UGCCAAAUCUU---GCAACCGGAAUAGUUAAGUAC-UUGUGA----
(((((---------------((((..((((((((.((((((.---....))))))--.))))....))---))..))...))))))).....-......---- ( -19.90)
>DroEre_CAF1 6304 84 - 1
UGGCUAUGGAGGCGGUGGCUAUGGAGGCAAUGGCUUCUUUGG---AAAGUAAAGA--UGCCAAAUCUU---GCCACCGGAAUAGUAAAGUAC-----------
..(((((.....(((((((...(((.....((((.((((((.---....))))))--.))))..))).---)))))))..))))).......----------- ( -29.20)
>DroYak_CAF1 4254 94 - 1
UGGUUAUGGUGGCGGUGGCUAUGGAGGCAAUGGCUUCUUUGG---AAAGUAAAGA--UGCCAGAUCUU---ACCGCCGAAACAGUAAAGUAC-UUGUGAUGGA
(.((((..((((((((((((.....)))..((((.((((((.---....))))))--.)))).....)---)))))))..((......))..-)..)))).). ( -27.10)
>DroPer_CAF1 11364 91 - 1
GGGCUACGGCGGCGGUGG------------GGGUUUCUUCGGUUAAACGUAAACCUCUGCUGAGGCUGUGAUCCAUCUGUCUAGUUAAGUGCCUUAUUAUUUG
((..((((((..(((..(------------((((((...((......)).)))))))..)))..))))))..))............................. ( -31.60)
>consensus
UGGCUAUGGAGGCGGUGG__AUGGAGGCAAUGGCUUCUUUGG___AAAGUAAAGA__UGCCAAAUCUU___GCCACCGGAAUAGUUAAGUAC_UUGUGAUU__
.............(((((.....((((...((((.((((((........))))))...))))..))))....))))).......................... ( -8.02 = -10.80 +   2.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:05 2006