| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,388,004 – 13,388,100 |
| Length | 96 |
| Max. P | 0.765656 |
| Location | 13,388,004 – 13,388,100 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 77.92 |
| Mean single sequence MFE | -21.83 |
| Consensus MFE | -10.10 |
| Energy contribution | -9.99 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.765656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13388004 96 - 27905053 U------UGCCAUUGCGAUUGCAAUUGGAUUGUAAUUACUCUAUGUAUACCUUACUCUGUAUGUGUAUGUGUGUGUGUAAUUAUAAUGUCAUCGUCUGCUUU .------..(((((((....)))).)))(((((((((((.(((..((((((.(((...))).).)))))..)).).)))))))))))............... ( -22.10) >DroSec_CAF1 21482 92 - 1 U------UGCCACUGCGAUUGCAAUUGGAUUGUAAUUACUUUAUGUAUACCUUUCUCUGUAUGUGU--G--UGUGUGUAAUUAUAAUGUCAUAGUCUGCUUU .------.......(((((((....((((((((((((((..((..(((((........)))))..)--)--.....))))))))))).)))))))).))... ( -18.10) >DroSim_CAF1 22211 94 - 1 U------UGUCACUGCGAUUGCAAUUGGAUUGUAAUUACUAUAUGUAUACCUUUCUCUGUAUGUGU--GUGUGUGUGUAAUUAUAAUGUCAUCGUCUGCUUU .------.......(((((.(((......((((((((((((((..(((((............))))--)..)))).))))))))))))).)))))....... ( -20.20) >DroEre_CAF1 22151 89 - 1 CUGCGAUUGCGAUUGCGAUUGCAAUUGGAUUGUAAUUACAGCAUAUAUAGCUCUCU------------GUGUGUGUGUAAUUAUAAUGUCAUCGUCUGCUU- .(((((((((....)))))))))..(((((((((((((((.(((((((((....))------------))))))))))))))))))).)))..........- ( -31.60) >DroYak_CAF1 26066 84 - 1 U------UGCGAAUGCGAUUGCAAUUGGAUUGUAAUUACUCCAUAUAUACCUCACU------------GUGUGUAUGUAAUUAUAAUGUCAUCGUCUGCUUU .------.(((...(((((.(((......((((((((((...((((((((......------------))))))))))))))))))))).))))).)))... ( -19.90) >DroAna_CAF1 20127 84 - 1 -------UGCAAUUGUGAUUGCAAUUGGAUUGUAAUUACUGCUC---------GAUGGGAAUAUAC--GUGUGUGUGUAAUUAUAAUGUCAUCGUCUGCUUU -------.......(((((((((((...))))))))))).((.(---------(((((.(((((((--....))))))........).))))))...))... ( -19.10) >consensus U______UGCCAUUGCGAUUGCAAUUGGAUUGUAAUUACUCCAUGUAUACCUUUCUCUGUAUGUGU__GUGUGUGUGUAAUUAUAAUGUCAUCGUCUGCUUU ........((....(((((.(((......((((((((((.....................................))))))))))))).)))))..))... (-10.10 = -9.99 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:35 2006