| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,895,596 – 1,895,701 |
| Length | 105 |
| Max. P | 0.995226 |
| Location | 1,895,596 – 1,895,701 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 86.72 |
| Mean single sequence MFE | -39.24 |
| Consensus MFE | -34.40 |
| Energy contribution | -35.40 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.88 |
| SVM decision value | 2.55 |
| SVM RNA-class probability | 0.995226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1895596 105 - 27905053 CGAGU-GGAUAGCCGGAGACCUGCAACUAAUUGCCGCCAUCGGGGGCUUAAAAGGUCAAGGCGAA-AGGCGGCACUUGGUUGGGGGAUUUCGAGGAGA------GAUAGCACA ...((-(.((..((.(((((((.(((((((.(((((((.(((..((((.....))))....))).-.))))))).))))))).))).))))..))...------.))..))). ( -42.00) >DroSec_CAF1 53971 105 - 1 CGAGU-GGAUAGUCGGAGACCUGCGACUAAUUGCCGCCAUCGGGGGCCUAAAAGGUCAAGGCGAA-AGGCGGCACUUGGCUGGGGGAUUUCGAGGAGA------GAUAGCACU ..(((-(.((..((((((.(((.((.((((.(((((((.(((..((((.....))))....))).-.))))))).)))).)).))).)))))).....------.))..)))) ( -38.30) >DroSim_CAF1 54773 105 - 1 CGAGU-GGAUAGUCGGAGACCUGCGACUAAUUGCCGCCAUCGGGGGCCUAAAAGGUCAAGGCGAA-AGGCGGCACUUGGCUGGGGGAUUUCGAGGAGA------GAUAGCACU ..(((-(.((..((((((.(((.((.((((.(((((((.(((..((((.....))))....))).-.))))))).)))).)).))).)))))).....------.))..)))) ( -38.30) >DroEre_CAF1 56161 106 - 1 CGAGUGGGAUGGUCGGAGACCUGCGACUAAUUGCCGCCAUCGAGGGCUUAAAAGGUCAAGGCGCAAAGGCGGCACUUGGUUGG-GAAUCCCGAGAAGU------GAUAGCACU ....((((((((((...))))..(((((((.(((((((..((..((((.....))))....))....))))))).))))))).-..))))))...(((------(....)))) ( -39.50) >DroYak_CAF1 59821 106 - 1 ------GGAUAGUCGGAGACCUGCGACUAAUUGCCGCCAUCGAGGGCUUAAAAGGUCAAGGCGAAACGGCGGCAGUUGGUUGG-GAAUUCUGAGAAGAGGUGCAGAUAGGAAU ------........(....)((((((((((((((((((.(((..((((.....))))....)))...))))))))))))))..-...((((....))))..))))........ ( -38.10) >consensus CGAGU_GGAUAGUCGGAGACCUGCGACUAAUUGCCGCCAUCGGGGGCUUAAAAGGUCAAGGCGAA_AGGCGGCACUUGGUUGGGGGAUUUCGAGGAGA______GAUAGCACU ............((((((.(((.(((((((.(((((((.(((..((((.....))))....)))...))))))).))))))).))).)))))).................... (-34.40 = -35.40 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:47 2006