Locus 5058

Sequence ID 3R_DroMel_CAF1
Location 13,327,244 – 13,327,357
Length 113
Max. P 0.986411
window8251

overview

Window 1

Location 13,327,244 – 13,327,357
Length 113
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 76.29
Mean single sequence MFE -22.91
Consensus MFE -12.50
Energy contribution -12.86
Covariance contribution 0.36
Combinations/Pair 1.06
Mean z-score -2.61
Structure conservation index 0.55
SVM decision value 2.04
SVM RNA-class probability 0.986411
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13327244 113 - 27905053
GGCAAACAGUGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGUCUC-AAAGCAAGAAAAAUUAUAUUGCUUAAUGCCU---GCACCACCGGCAACCAUCAGACC-ACCACUUGC
.((((...(((((((((((((((.................))).))))..-.((((((...........))))))...))))---))))....(((........).))-.....)))) ( -28.63)
>DroPse_CAF1 95650 90 - 1
AGCAAACAUCGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGACUC-AAAGCAAGAAAAAUUAUAUUGCUUAACGCCU---GCCACCCUC------------------------
..........(((((((..((((.................))))......-.((((((...........))))))..)))))---)).......------------------------ ( -20.73)
>DroEre_CAF1 81063 113 - 1
AGCAAACACUGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGUCUC-AAAGCAAGAAAAAUUAUAUUGCUUAACGCCU---GCACCACUGGCAC-CACCGGCCCAACCACUUUC
.((......((((((((((((((.................))).))))..-.((((((...........))))))...))))---)))......))..-....((.....))...... ( -26.33)
>DroWil_CAF1 77511 102 - 1
AACAAACAUCCCAGGUGACGAGCAUUAAAACGAUUCAACAGCUC-GACUCAAAAGCAAGAAAAAUU--AUUGCUUGACGCCCUAUGCUCUUGC-------CUCACACC-AUCA-----
.............((((.(((((.................))))-)........((((((...((.--...((.....))...))..))))))-------....))))-....----- ( -19.73)
>DroAna_CAF1 99140 104 - 1
AACAAACAUUGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGUCUC-AAAGCCAGAAAAAUUAUAUUGCUUUACGCCU---GCAAGACCCACAA-------ACC-ACUACAU--
........(((((((((((((((.................))).))))..-(((((...............)))))..))))---)))).........-------...-.......-- ( -21.29)
>DroPer_CAF1 89796 90 - 1
AGCAAACAUCGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGACUC-AAAGCAAGAAAAAUUAUAUUGCUUAACGCCU---GCCACCCUC------------------------
..........(((((((..((((.................))))......-.((((((...........))))))..)))))---)).......------------------------ ( -20.73)
>consensus
AGCAAACAUCGCAGGUGACGAGCAUUAAAACGAUUCAACAGCUCCGACUC_AAAGCAAGAAAAAUUAUAUUGCUUAACGCCU___GCAACACCC___________ACC_ACCA_____
..........(((((((..((((.................))))........((((((...........))))))..)))))...))............................... (-12.50 = -12.86 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:12 2006