| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,887,145 – 1,887,259 |
| Length | 114 |
| Max. P | 0.901067 |
| Location | 1,887,145 – 1,887,259 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.58 |
| Mean single sequence MFE | -23.50 |
| Consensus MFE | -17.59 |
| Energy contribution | -17.53 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.901067 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1887145 114 - 27905053 GUGUGCGCACCUGCCUGCAAUCGUAAUUUCAAUAAAAGUUGUUACGUGCACGUUGAAAUUUUAAUUGAAAGCCCCAACUACGCUCG--CACACUUUCCC--UCCGACACACACUCAUA (((((((((......)))...((((.(((((((.((((((...(((....)))...)))))).)))))))........))))...)--)))))......--................. ( -24.20) >DroPse_CAF1 35560 105 - 1 GUGUGUGCACCUGCCUGCAAUCGUAAUUUCAAUAAAAGUUGUUACGUGCACGUUGAAAUUUUAAUUGAAAGCACCAACCACAC------ACACAAGCAC--ACCGUCACAU---UG-- (((((((....(((.(((....))).(((((((.((((((...(((....)))...)))))).)))))))))).....)))))------))........--..........---..-- ( -23.90) >DroYak_CAF1 51373 112 - 1 GUGUGCGCACCUGCCUGCAAUCGUAAUUUCAAUAAAAGUUGUUACGUGCACGUUGAAAUUUUAAUUGAAAGCCCCAACUACGCUAG--CACAGUUUCCC--UCAAACACACACUCU-- (((((.((....)).(((...((((.(((((((.((((((...(((....)))...)))))).)))))))........))))...)--)).........--.....))))).....-- ( -21.70) >DroMoj_CAF1 40791 89 - 1 GUGUGUGCAGCUGCCUGCAAUCGUAAUUUCAAUAAAAGUUGUUACGUGCACGUUGAAAUUUUAAUUGAAAGCACCAACCACACGCCA----AG------------------------- ((((((((((....)))))...((..(((((((.((((((...(((....)))...)))))).)))))))..))....)))))....----..------------------------- ( -24.30) >DroAna_CAF1 34108 116 - 1 GUGUGUGCACCUGCCUGCAAUCGUAAUUUCAAUAAAAGUUGUUACGUGCACGUUGAAAUUUUAAUUGAAAGCCCCAACCACACUCUCUCACACGUACUCAUUUAUUCGCACACUCA-- (.((((((.......(((....))).(((((((.((((((...(((....)))...)))))).))))))).....................................)))))).).-- ( -22.40) >DroPer_CAF1 35891 102 - 1 GUGUGUGCACCUGCCUGCAAUCGUAAUUUCAAUAAAAGUUGUUACGUGCACGUUGAAAUUUUAAUUGAAAGCACCAA---CAC------ACACAAACAC--ACCGUCACAU---UG-- (((((((....(((.(((....))).(((((((.((((((...(((....)))...)))))).))))))))))....---)))------))))......--..........---..-- ( -24.50) >consensus GUGUGUGCACCUGCCUGCAAUCGUAAUUUCAAUAAAAGUUGUUACGUGCACGUUGAAAUUUUAAUUGAAAGCACCAACCACACUC____ACACAUACAC__UCCGUCACAC___CA__ (((((.(((......)))........(((((((.((((((...(((....)))...)))))).)))))))........)))))................................... (-17.59 = -17.53 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:46 2006