Locus 504

Sequence ID 3R_DroMel_CAF1
Location 1,886,249 – 1,886,342
Length 93
Max. P 0.620280
window809

overview

Window 9

Location 1,886,249 – 1,886,342
Length 93
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 73.73
Mean single sequence MFE -24.72
Consensus MFE -8.27
Energy contribution -8.69
Covariance contribution 0.42
Combinations/Pair 1.29
Mean z-score -2.13
Structure conservation index 0.33
SVM decision value 0.18
SVM RNA-class probability 0.620280
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1886249 93 + 27905053
UCCAUGGAAAAUGGCAAAAGUUUAGCAUAAACUU-UUGCCGCUUUACAUGCAAAACUUGCAAUUGGCAGUGGCCGA-----------GGCGAACAUGUU-UGCCA---U
..((((.(((.(((((((((((((...)))))))-)))))).))).))))............(((((....)))))-----------((((((....))-)))).---. ( -33.00)
>DroVir_CAF1 45727 82 + 1
CUUAUAUAGAAUUGCAAAACUUUGGCAUAAAGUU--UGGCGCUUUACAUGCA-AACUUGCAAUUGACAGCAGCCGA-----------AAGAAACGU-------------
................((((((((...)))))))--)(((((((((..((((-....))))..))).))).)))..-----------.........------------- ( -14.30)
>DroGri_CAF1 40696 96 + 1
CUUAUAGGGAAUUGCAAAAGUUUGGCAUAAAGUU--UGCCGCUUUGCAAGUAAAACUUGCAUUUGGCAGUAGACGA-----------AUGAAAUGUGCUGUGCAACAUU
...........(((((..(((.(..(((...(((--(((.(((.((((((.....))))))...))).))))))..-----------)))..)...))).))))).... ( -26.00)
>DroWil_CAF1 38615 104 + 1
UGUAUGGAAAAUGCCAAAAGUUUAGCAUAAAGUUUUUGGCGCUUAACAUGCAA-ACUUGCAAUUGGCAGCGGCCAAACCAACGAACGAACGAACAUGCC-UCCCG---G
((((((..((.((((((((..((......))..)))))))).))..)))))).-....(((.(((((....))))).....((......))....))).-.....---. ( -25.30)
>DroAna_CAF1 32856 92 + 1
UCUAUGGAAAAUGGCAAAAGUUUAGCAUAAACUU-UUGGCGCUUUACAUGCAAAACUUGCAAUUGGCAGUGGCCAA-----------AGCGAACAUGUU-UUC-A---G
....(((((((((.((((((((((...)))))))-))).((((((...((((.....))))...(((....)))))-----------))))..))).))-)))-)---. ( -26.30)
>DroPer_CAF1 35188 94 + 1
UCUAUGGAAAAUGGUAAAAGUUUAGCAUAAACUU-UUGGUGCUUUACAUGCAAAACUUGCAAUUGGCAGUGGCCAAA----------AACGAACAUGUU-UUCCA---G
....(((((((((((....((..(((((......-...)))))..)).((((.....)))).(((((....))))).----------.....)).))))-)))))---. ( -23.40)
>consensus
UCUAUGGAAAAUGGCAAAAGUUUAGCAUAAACUU_UUGGCGCUUUACAUGCAAAACUUGCAAUUGGCAGUGGCCAA___________AACGAACAUGUU_UGCCA___G
..((((.......(((..(((((.((((...................)))).))))))))..(((((....))))).................))))............ ( -8.27 =  -8.69 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:45 2006