| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,885,585 – 1,885,682 |
| Length | 97 |
| Max. P | 0.913115 |
| Location | 1,885,585 – 1,885,682 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 79.18 |
| Mean single sequence MFE | -31.23 |
| Consensus MFE | -23.06 |
| Energy contribution | -22.70 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913115 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1885585 97 - 27905053 GUUUCUCUCUGCUCCUCGGGAUCGCGCAUCCUGCAGAUCCUGUGGGCUCAAUGGCGCAACACGCGCUGCCCACUG-GCUGAGAACAUAAUUUUCGCAC .....((((.(((....((((((..((.....)).))))))((((((.....(((((.....))))))))))).)-)).))))............... ( -36.60) >DroPse_CAF1 34158 80 - 1 UUU----------CCAAGGGG----AGACCCUUCUGA----GUGUGCUUAAUGGCGCAACACGCGCUGCUCAAUGGGCCGAGCACAUAAUUCUCGCAU ...----------..(((((.----...)))))....----((((((((...(((((.....)))))(((.....))).))))))))........... ( -30.30) >DroSec_CAF1 43712 98 - 1 GUUUCUCUCUGCUCCUCGGGAUCCCGCAUCCUGCAGAUCCUGUGAUCUCAAUGGCGCAACGCGCGCUGCUCAAUGGGCCGAGAACAUAAUUUUCGCAC .....((((.(((((.(((((((..((.....)).))))))).)........(((((.....))))).......)))).))))............... ( -30.00) >DroSim_CAF1 44339 98 - 1 GUUUCUCUCUGCUCCUCGGGAUCCCGCAUCCUGCAGAUCCUGUGUUCUCAAUGGCGCAACACGCGCUGCUCAAUGGGCCGAGAACAUAAUUUUCGCAC .........(((....(((((((..((.....)).)))))))(((((((...(((((.....)))))(((.....))).)))))))........))). ( -33.60) >DroEre_CAF1 44442 96 - 1 GUUGCUUUCUGCUCUCUAGGAUCCCGGAUCCUGCAGAUCCUGUGUGCUUAAUGACGCAACACGCGCUGCUAAAUGGGCCGAGUACAUAAUUCUCGA-- ..((..(((.((((...((((((...))))))((((....(((((((........)).)))))..)))).....)))).)))..))..........-- ( -25.40) >DroYak_CAF1 49623 98 - 1 GUUGCUCUCCGCAUCUUAGGAUCCUGGAUCCUGCAGAUCCUGUGUGCUCAAUGACGCAACACGCGCUGCCCAAUGGGCCGUGUACAUAAUUCUCGCAG (((((((...((((..(((((((.((.......))))))))).)))).....)).)))))..((((.((((...)))).))))............... ( -31.50) >consensus GUUUCUCUCUGCUCCUCGGGAUCCCGCAUCCUGCAGAUCCUGUGUGCUCAAUGGCGCAACACGCGCUGCUCAAUGGGCCGAGAACAUAAUUCUCGCAC ..............((((((((.....)))))).))....(((((((((...(((((.....)))))(((.....))).))))))))).......... (-23.06 = -22.70 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:44 2006