Locus 502

Sequence ID 3R_DroMel_CAF1
Location 1,885,113 – 1,885,206
Length 93
Max. P 0.633156
window807

overview

Window 7

Location 1,885,113 – 1,885,206
Length 93
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 80.28
Mean single sequence MFE -23.40
Consensus MFE -17.43
Energy contribution -18.35
Covariance contribution 0.92
Combinations/Pair 1.16
Mean z-score -1.24
Structure conservation index 0.74
SVM decision value 0.21
SVM RNA-class probability 0.633156
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1885113 93 - 27905053
-----GGAAAGCGGCAAAUGCAAAAGCAAAGUUAGGGUUAAACUCUUUUGUGGCAUUAGCGAAACCAGAGAAGGGAAACUCCAUCGUGUCGCGACUGA
-----.....((((((..(((....)))......(((((...(((((((.(((...........))).))))))).))).))....))))))...... ( -24.90)
>DroPse_CAF1 33738 96 - 1
UGGGCUGAAUGCGGCAAAUGCAAAAGCAAAGUUUCACCUAAACUCUUUUGUGGCUUCCAUGCUAUCUA--UAGGGGUACAGGGACGUGUCGCGACGAA
.........(((((((..(((....))).....((.(((..((((((..(((((......)))))...--.))))))..)))))..)))))))..... ( -25.80)
>DroSec_CAF1 43142 93 - 1
-----GGAAAGCGGCAAAUGCAAAAGCAAAGUUAGGACUAAACUCUUUUGUGGCAUCGGAGAAACCAGAGAAGGGAAACUCCAUCGUGUCGCGACUGA
-----.....((((((..(((....)))......(((.....(((((((.(((..((...))..))).)))))))....)))....))))))...... ( -24.80)
>DroSim_CAF1 43772 93 - 1
-----GGAAAGCGGCAAAUGCAAAAGCAAAGUUAGGACUAAACUCUUUUGUGGCAUCGGAGAAACCAGAGAAGGGAAACUCCAUCGUGUCGCGACUGA
-----.....((((((..(((....)))......(((.....(((((((.(((..((...))..))).)))))))....)))....))))))...... ( -24.80)
>DroEre_CAF1 43865 93 - 1
-----GGAAAGUGGCAAAUGCAAAAGCAAAGUUUCGGCUAAACUCUUCUAUGGCAUCCGAGAAACCAGAGAAGGGAAACACCAUUGUGUCGCGACUGA
-----.....((((((..(((....))).......((.....(((((((.(((..((...))..))).))))))).....))....))))))...... ( -22.20)
>DroYak_CAF1 49035 85 - 1
-------------GCAAAUGCAAAAGCAAAGAUUCGGGAAAACUCUUCUACGGCAUCCGAGAAACCAGAGAAGGGAAACACCAUCGUGUCGCGACUGA
-------------((...(((....)))..(((.(((.....(((((((.(((...))))))....))))..((......)).))).)))))...... ( -17.90)
>consensus
_____GGAAAGCGGCAAAUGCAAAAGCAAAGUUACGGCUAAACUCUUUUGUGGCAUCCGAGAAACCAGAGAAGGGAAACACCAUCGUGUCGCGACUGA
..........((((((..(((....)))..............(((((((.(((...........))).)))))))...........))))))...... (-17.43 = -18.35 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:43 2006