Locus 50

Sequence ID 3R_DroMel_CAF1
Location 307,750 – 307,870
Length 120
Max. P 0.996929
window79

overview

Window 9

Location 307,750 – 307,870
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.25
Mean single sequence MFE -42.64
Consensus MFE -39.12
Energy contribution -39.88
Covariance contribution 0.76
Combinations/Pair 1.08
Mean z-score -1.92
Structure conservation index 0.92
SVM decision value 2.77
SVM RNA-class probability 0.996929
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 307750 120 + 27905053
UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCGAUCUUCAUCUGCAGCUUUAGCAAGCCCCUGGCGCUAGUGGACUUCCUGCAAGCGCAGGAGGCGCAUAGCGACAACGUGGCCACGU
((((((.((...(((((...((((((.....))))))...........((((....))))..)))))(((((((..((((((((....))))))))))).)))).....))))))))... ( -46.70)
>DroSec_CAF1 44152 120 + 1
UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCGAUCUUCAUCUGCAACUUUAGCAAGCCCCUGGCACUGGUGGACUUCCUGCAGGCGCAGGAGGCGCAUAGCGACAACGUGGCCACGU
((((((.((((((((((...((((((.....)))))).......(((.......))).....)))))))).((((.((((((((....))))))))).)))........))))))))... ( -46.60)
>DroSim_CAF1 44999 120 + 1
UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCGAUCUUCAUCUGCAACUUUAGCAAGCCCCUGGCACUGGUGGACUUCCUGCAGGCGCAGGAGGCGCAUAGCGACAACGUGGCCACGU
((((((.((((((((((...((((((.....)))))).......(((.......))).....)))))))).((((.((((((((....))))))))).)))........))))))))... ( -46.60)
>DroEre_CAF1 47072 120 + 1
UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCGAUCUUCAUCUGCAGCUUCAGCAAACCCCUGGCCCUAGUAGACUUCCUGCAGGCGCAGGAGGCGCAUAGCGACAAUGUGGCCACCU
(((((((((.(((((.....((((((.....)))))).....(((((((..((((.......))))..)).)))))..((((((....)))))))))))....))).....))))))... ( -40.40)
>DroYak_CAF1 46888 120 + 1
UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCAAUCUUCAUCUGCAGCUUUAGCAAACCUCUUGCACUAGUGGACUUCCUUCAGGCGCAGGAGGCGCAUAGCGACAACGUUGCUACGU
......(((((((....))).))))...................(((.((....))...((((((((.((.(.((....))..).)).)))))))).)))(((((((...)))))))... ( -32.90)
>consensus
UGGCCAUCGAGUGCCAGUACAUCGAAACACUUUCGAUCUUCAUCUGCAGCUUUAGCAAGCCCCUGGCACUAGUGGACUUCCUGCAGGCGCAGGAGGCGCAUAGCGACAACGUGGCCACGU
((((((.((((((((((...((((((.....)))))).......(((.......))).....)))))))).(((..((((((((....)))))))))))..........))))))))... (-39.12 = -39.88 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:22 2006