| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 120,931 – 121,031 |
| Length | 100 |
| Max. P | 0.568918 |
| Location | 120,931 – 121,031 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 79.30 |
| Mean single sequence MFE | -21.77 |
| Consensus MFE | -13.70 |
| Energy contribution | -14.48 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 120931 100 - 27905053 UCCCA------------AA---AACCCCGGACACUUACCUUAUCGCGAAUGUCUUGCCUCAUCUUCUCGCGCUCCUCCUCCAUUUUCCGGUGCUUUUCCUUUCGGCGGUCCUCGG ..((.------------..---.((((((((.............(((((((........)))....))))((.((.............)).)).......))))).)))....)) ( -17.52) >DroPse_CAF1 24399 103 - 1 ACUCC------------CACCCCAUCCCACAGACUCACCUUAUCGCGAAUGUCUUGCCUCAUCUUUUCGCGCUCUUCCUCCAUUUUCCGGUGCUUCUCCUUGCGCCGAUCCUCGG .....------------.........((...............((((((................))))))................((((((........))))))......)) ( -17.89) >DroGri_CAF1 31216 112 - 1 AGCAGAAGAGCAGAACAAA---ACAGAUUGCCGCUUACCUUAUCGCGUAUAUCCUGUCUCAUCUUUUCGCGCUCCUCCUCCAUUUUCCGGUGCUUCUCCUUGCGCCGGUCUUCGG (((.((((((..((.....---((((((...(((..........)))...)).)))).))..))))))..)))......((.....(((((((........))))))).....)) ( -26.10) >DroEre_CAF1 21818 100 - 1 CCUCC------------AA---AACCCCGGAUACUUACCUUAUCGCGAAUGUCUUGCCUCAUCUUCUCGCGCUCCUCCUCCAUUUUUCGGUGUUUUUCCUUGCGCCGGUCCUCGG .....------------..---..((..((((...........((((((((........)))....)))))................((((((........))))))))))..)) ( -19.70) >DroYak_CAF1 27667 100 - 1 CCGAC------------AA---AACGACGGAUACUUACCUUAUCGCGAAUGUCUUGCCUCAUCUUCUCGCGCUCCUCCUCCAUUUUUCGGUGCUUUUCCUUGCGCCGGUCCUCGG .....------------..---..(((.((((...........((((((((........)))....)))))................((((((........))))))))))))). ( -24.40) >DroAna_CAF1 20072 100 - 1 ACGAG------------CC---AUCAGCGAGCACUCACCUUGUCGCGAAUGUCUUGCCUCAUCUUCUCGCGUUCCUCCUCCAUUUUCCGGUGCUUCUCCUUGCGCCGCUCCUCGG .((((------------..---....(((((.........((..((((.....))))..))....))))).................((((((........))))))...)))). ( -25.02) >consensus ACCAC____________AA___AACCCCGGACACUUACCUUAUCGCGAAUGUCUUGCCUCAUCUUCUCGCGCUCCUCCUCCAUUUUCCGGUGCUUCUCCUUGCGCCGGUCCUCGG ...........................................((((((((........)))....)))))........((.....(((((((........))))))).....)) (-13.70 = -14.48 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:52 2006