Locus 4994

Sequence ID 3R_DroMel_CAF1
Location 13,150,904 – 13,151,021
Length 117
Max. P 0.961400
window8166

overview

Window 6

Location 13,150,904 – 13,151,021
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.03
Mean single sequence MFE -22.66
Consensus MFE -21.94
Energy contribution -21.72
Covariance contribution -0.22
Combinations/Pair 1.13
Mean z-score -1.21
Structure conservation index 0.97
SVM decision value 1.53
SVM RNA-class probability 0.961400
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13150904 117 + 27905053
CCAUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGUAAUAUAUCUUCCU---CCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAAUGUCUGCCACGUUU
...(((((((...(((((...((((((......))))))))))))))))))..................---...((((...((((..(((........)))..)))).))))....... ( -21.50)
>DroVir_CAF1 164888 120 + 1
UCAUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGCAAUAUAUCUUCCUUCUCCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAACGUCUGCCACGUUU
..((((((..((((...(((.((((((......)))))).))).....))))...))))))..............((((...((((..(((........)))..)))).))))....... ( -25.00)
>DroGri_CAF1 165228 120 + 1
UCUUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGCAAUAUAUCUUCCUCCUACUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAACGUCUGCCACGUUU
..((((((((...(((((...((((((......)))))))))))))))))))..(((.................)))((((.((((..(((........)))..))))..))))...... ( -24.33)
>DroWil_CAF1 165077 117 + 1
UCGUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGUAAUAUAUCUUCCU---CCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAAUGUCUGUUACGUUU
..((((((..((((...(((.((((((......)))))).))).....))))...))))))........---...((((...((((..(((........)))..)))).))))....... ( -19.80)
>DroMoj_CAF1 181065 120 + 1
UCAUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGCAAUAUAUCUUCCUUCUCCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAACGUCUGCCACGUUU
..((((((..((((...(((.((((((......)))))).))).....))))...))))))..............((((...((((..(((........)))..)))).))))....... ( -25.00)
>DroAna_CAF1 169047 117 + 1
CCUUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGUAAUAUAUCUUCCU---CCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAAUGUCGGCUACGUUU
..((((((((...(((((...((((((......))))))))))))))))))).................---...((.(...((((..(((........)))..)))).).))....... ( -20.30)
>consensus
UCAUGUUGAUUUGCACAGCAUGAAAUAUUCAUUUGUUUCCUGUGAUCGGCAAUUGCAAUAUAUCUUCCU___CCUGCGGUAUCGUUUUCUACUCAAUUUUAGUCAACGUCUGCCACGUUU
..((((((..((((...(((.((((((......)))))).))).....))))...))))))..............((((...((((..(((........)))..)))).))))....... (-21.94 = -21.72 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:49 2006