| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,148,778 – 13,148,872 |
| Length | 94 |
| Max. P | 0.633462 |
| Location | 13,148,778 – 13,148,872 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.25 |
| Mean single sequence MFE | -24.06 |
| Consensus MFE | -16.42 |
| Energy contribution | -17.75 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13148778 94 + 27905053 GCGAGAACAGCUUUUAUGCUUAAUGGCAGUUAUUUAGUGCAAUUCACUGUAAAAUUGUUGCCAUAGGAGAAUCU--GCC------ACUCGCCAUCG------CCAUCG---------- (((((...(((......)))...((((((...((..(((((((.............)))).)))..))....))--)))------)))))).....------......---------- ( -23.62) >DroVir_CAF1 163423 90 + 1 GCGAGAACAGCUUUUAUGCUUAAUGGCAGUUAUUUAGUGCAAUUCACUGUAAAAUUGUAGCCACGGC------------UGGCCCACUCUGCUCUA------GUCUCG---------- .(((((..(((......)))....(((((........(((((((........)))))))((((....------------)))).....)))))...------.)))))---------- ( -21.00) >DroGri_CAF1 163596 106 + 1 GCGAGAACAGCUUUUAUGCUUAAUGGCAGUUAUUUAGUGCAAUUCACUGUAAAAUUGUAGCCAGGGCUGAAUUUUUGCG------GCUGUCCCCGG------GUCUAGCCUGCUAUCU ((((((((((((((...(((.....((((((...(((((.....)))))...))))))))).)))))))..)))))))(------((((..(....------)..)))))........ ( -30.30) >DroWil_CAF1 162635 88 + 1 GCGAGAACAGCUUUUAUGCUUAAUGGCAGUUAUUUAGUGCAAUUCACUGUAAAAUUGUUGCCAUAAGAGAAUUU--ACC------GCUCGCCAU------------CC---------- (((((...(((......)))..(((((((..((((((((.....)))))...)))..)))))))..........--...------.)))))...------------..---------- ( -21.70) >DroYak_CAF1 176794 100 + 1 GCGAGAACAGCUUUUAUGCUUAAUGGCAGUUAUUUAGUGCAAUUCACUGUAAAAUUGUUGCCAUAGGAGAAUCU--GCC------ACUCGCCAUCGCCAUCGCCAUCG---------- (((((...(((......)))...((((((...((..(((((((.............)))).)))..))....))--)))------)))))).................---------- ( -23.62) >DroAna_CAF1 167334 88 + 1 GCGAGAACAGCUUUUAUGCUUAAUGGCAGUUAUUUAGUGCAAUUCACUGUAAAAUUGUUGCCAUAGGAGAGCCU--GCC------ACUCGCCAG------------CU---------- (((((..((((((((.......(((((((..((((((((.....)))))...)))..)))))))..))))).))--)..------.)))))...------------..---------- ( -24.10) >consensus GCGAGAACAGCUUUUAUGCUUAAUGGCAGUUAUUUAGUGCAAUUCACUGUAAAAUUGUUGCCAUAGGAGAAUCU__GCC______ACUCGCCAU_G_________UCG__________ (((((...(((......)))..(((((((..((((((((.....)))))...)))..)))))))......................)))))........................... (-16.42 = -17.75 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:46 2006