| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,880,658 – 1,880,763 |
| Length | 105 |
| Max. P | 0.616015 |
| Location | 1,880,658 – 1,880,763 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.88 |
| Mean single sequence MFE | -36.12 |
| Consensus MFE | -20.78 |
| Energy contribution | -21.78 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1880658 105 + 27905053 GGGGUGCGAAUCCUUUGAAG-UGUGCGAUUCCCUC------ACUUCAGGCGCUGUCGGCUGGUUCCACCGAGCCAACAUUGCCCAGAUGUCGCCCUCCUCCUCGACCUCCUU ((((.(((((((...(((((-((.(.(....)).)------))))))((((.(((.((((((.....)).)))).))).))))..))).)))).)))).............. ( -38.10) >DroSec_CAF1 38718 105 + 1 GGGGUGCGAUUCCUUCGAAG-UGUGCGAUUCCCUC------ACUUCAGGCGCUGUCGGCUGGUUCCAGCGAGCCAACAUUGCCCAGAAGUCGCCCUCCUCCUCCACCUCCUU ((((.((((...((((((((-((.(.(....)).)------))))).((((.(((.((((.((....)).)))).))).))))..)))))))).)))).............. ( -40.10) >DroSim_CAF1 39327 105 + 1 GGGGUGCCAUUCCUUCGAAG-UGUGCGAUUCCCUC------ACUUCAGGCGCUGUCGGCUGGUUCCAGCGAGCCAACAUUGCCCAGAAGUCGCCCUCCUCCUCCACCUCCUU ((((((......((((((((-((.(.(....)).)------))))).((((.(((.((((.((....)).)))).))).))))..)))).))))))................ ( -35.50) >DroEre_CAF1 39441 105 + 1 AGGGUGGGAAUCGUUUGAAG-UGCGAGUUUCUCUC------ACUGCGGGCACUGCAGGCUGGUUCCAGCGAGCCAGCAUUGCCCAGAAGUCGCCCUCCUCCUCCACCUCCUU .(((((((........(.((-((.(((...))).)------))).)(((((((((((((((((((....)))))))).)))).....))).))))......))))))).... ( -41.70) >DroYak_CAF1 44736 105 + 1 AAGGUGCGAGUCCUUCGAAG-UGUGCGAUUCCCUC------ACUUCAGGCACUGCCGGCUGGUUCCAGCGAGCCAGCAUUGCCCAGAAGUCGCCCUCCUCCUCCACCUCCUU .(((.((((...((((((((-((.(.(....)).)------))))).((((.(((.((((.((....)).)))).))).))))..)))))))))))................ ( -39.90) >DroAna_CAF1 28652 103 + 1 AACGUG------GUUCGACGGUCUUCCGCUCCUCCGCUGUAUCUACAGGCACUGUCGGCUUGAUAUUUAUCCCCAGAAUGGCCCAGAUGUCGCGCUCCUCCUC---CUCCUU ...(.(------(..(((((((...((((......))(((....))))).)))))))((.((((((((....((.....))...)))))))).)).)).)...---...... ( -21.40) >consensus AGGGUGCGAAUCCUUCGAAG_UGUGCGAUUCCCUC______ACUUCAGGCACUGUCGGCUGGUUCCAGCGAGCCAACAUUGCCCAGAAGUCGCCCUCCUCCUCCACCUCCUU ((((((........(((........))).............(((((.((((.(((.((((.((....)).)))).))).))))..)))))))))))................ (-20.78 = -21.78 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:39 2006