| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,143,824 – 13,143,916 |
| Length | 92 |
| Max. P | 0.778463 |
| Location | 13,143,824 – 13,143,916 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 91.81 |
| Mean single sequence MFE | -28.88 |
| Consensus MFE | -24.06 |
| Energy contribution | -24.14 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13143824 92 - 27905053 CUGUA------UACGUUUGGCGGAGGUCUCUGUUUGCCUUUCUCAUGAUAUCCCGCGUUAUCCUCCCGACCUGC--GUGUCGCAGGAUGUCAAGUGUGCA ..(((------(((...(((..(((((........)))))..)))((((((((.(((.(((.(.........).--))).))).)))))))).)))))). ( -29.40) >DroSec_CAF1 173155 92 - 1 CUUUA------UACGUUUGGAGGAGGUCUCUGUUUGCCUUUCUCAUGAUAUCCUGCGUUAUCCUCCCGACCUGC--GUGUCGCAGGAUGUCAAGUGUGCA ...((------(((...(((..(((((........)))))..)))((((((((((((.(((.(.........).--))).)))))))))))).))))).. ( -30.90) >DroSim_CAF1 158200 92 - 1 CUAUA------UACGUUUGGCGGAGGUCUCUGUUUGCCUUUCUCAUGAUAUCCUGCGUUAUCCUCCCGACCUGC--GUGUCGCAGGAUGUCAAGUGUGCA ...((------(((...(((..(((((........)))))..)))((((((((((((.(((.(.........).--))).)))))))))))).))))).. ( -30.10) >DroEre_CAF1 164244 98 - 1 CCAUAUACUCGUACGUUUGCCGGAGGUCUCUGUUUGCCUUUCUCAUGAUAUCCUGCGUUAUCCUCCCGACCUGC--GUGUCGCGGGAUGUCAAGUGUGCA ..........(((((..((..((((((........))))))..))((((((((((((.(((.(.........).--))).))))))))))))..))))). ( -28.80) >DroYak_CAF1 171698 89 - 1 -----------UACGUUUGCCGGAGGUCUCUGUUUGCCUUUCUCAUGAUAUCCUGCGUUAUCCUCCCGACCUGCGCGUGUCGCAGGAUGUCAAGUGUGCA -----------......((((((((((........))))))....((((((((((((.(((.(.(.......).).))).))))))))))))...).))) ( -25.20) >consensus CUAUA______UACGUUUGGCGGAGGUCUCUGUUUGCCUUUCUCAUGAUAUCCUGCGUUAUCCUCCCGACCUGC__GUGUCGCAGGAUGUCAAGUGUGCA ...........(((...((..((((((........))))))..))((((((((((((.(((...............))).)))))))))))).))).... (-24.06 = -24.14 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:43 2006