Locus 4986

Sequence ID 3R_DroMel_CAF1
Location 13,120,212 – 13,120,310
Length 98
Max. P 0.641704
window8153

overview

Window 3

Location 13,120,212 – 13,120,310
Length 98
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 78.76
Mean single sequence MFE -33.00
Consensus MFE -20.65
Energy contribution -21.82
Covariance contribution 1.17
Combinations/Pair 1.27
Mean z-score -1.50
Structure conservation index 0.63
SVM decision value 0.22
SVM RNA-class probability 0.641704
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13120212 98 - 27905053
UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAGCAGGGAAA--------------GGAAAUGCCGGGAAAGCUGGGAAA---ACCCGGUCGCCUGGGCCAAAUUAUGAA
((((..........((((.(((((..(((.....))).))))).)))--------------)......(((((...((((((...---.))))))..)))))))))......... ( -35.00)
>DroSec_CAF1 150556 83 - 1
UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAG-----------------------------CCGGGAAAGCUGGGGAA---ACCCGGUCGCCUGGGUCAAAUUAUGAA
((((.....)))).(...(((((((((((.....)))..-----------------------------..(((...((((((...---.))))))..)))))).)))))...).. ( -29.90)
>DroSim_CAF1 135310 98 - 1
UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAGCAGGGAAA--------------GGAAAGGCCGGGAAAGCUGGGAAA---ACCCGGUCGCCUGGGUCAAAUUAUGAA
((((..........((((.(((.((((((........))).))).))--------------).)))).(((((...((((((...---.))))))..)))))))))......... ( -33.00)
>DroEre_CAF1 140544 106 - 1
UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAGCAGGGGG-CGAAAA-----GCCGGGAAAGCCGGGAAAGCUGGGAAA---AACCGGUCGCCUGGGUCGAAUUAUGAA
.(((((((........))))((((((.(((((....))).)).)))-)))...-----)))..((...(((((...(((((....---..)))))..))))).)).......... ( -36.60)
>DroYak_CAF1 148010 103 - 1
UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAGCAGGGAAACGAGAA--------CGAAAAGCCGGGAAAGCUGGGAA----AACCGGUCGCCUGGGUCGAAUUAUGGA
((((.....))))..(((((((.((.(((........))).)).)))))))..--------(((....(((((...(((((...----..)))))..))))).)))......... ( -32.00)
>DroAna_CAF1 140114 108 - 1
UGGCACAAUGUCAACUUUGUUUGCGCUCUUUGUCAGCAAUUGAAUAA---GGGGGAAA---GGGUCUUUCUGGAA-ACUGGGCAACCGACCCUGUCGACUGGGUCAAAUUAUGAA
((((.(...(((.............(((((((((((...))).))))---))))((.(---(((((.....(...-.).((....)))))))).)))))..)))))......... ( -31.50)
>consensus
UGGCACAAUGUCAACUUUGUUUGCCCGCUUUGCCAGCAGCAGGGAAA______________GGAAAAGCCGGGAAAGCUGGGAAA___ACCCGGUCGCCUGGGUCAAAUUAUGAA
((((..........(((((((.((..((...))..)))))))))........................(((((...((((((.......))))))..)))))))))......... (-20.65 = -21.82 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:38 2006