Locus 4980

Sequence ID 3R_DroMel_CAF1
Location 13,107,247 – 13,107,340
Length 93
Max. P 0.970013
window8143

overview

Window 3

Location 13,107,247 – 13,107,340
Length 93
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 92.96
Mean single sequence MFE -24.78
Consensus MFE -21.24
Energy contribution -20.92
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -1.81
Structure conservation index 0.86
SVM decision value 1.65
SVM RNA-class probability 0.970013
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13107247 93 + 27905053
AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGUAGAGCUUGACUGCCUGGAGAAAUUCCAGGUGGGGGCAUUGGAAA---------GG
.......(((..((.((((((.(((((................)))))..))....(..(((((((...)))))))..).)))).))..))---------). ( -25.49)
>DroSec_CAF1 137800 93 + 1
AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGUAGAGCUCGACUGCCUGGAGAAAUUUCAGGUGGGGGCAUUGGAAA---------GG
.......(((..((...((((.((((...............)))))))).((((..(..(((((((...)))))))..)))))..))..))---------). ( -22.66)
>DroSim_CAF1 122550 93 + 1
AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGUAGAGCUUGACUGCCUGGAGAAAUUUCAGGUGGGGGCAUUGGAAA---------GG
.......(((..((.((((((.(((((................)))))..))....(..(((((((...)))))))..).)))).))..))---------). ( -22.59)
>DroEre_CAF1 127219 93 + 1
AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGCAGGGCUUGACUGCCUGGAGAUAUUUCAGGUGGGGGCAAUGGAAA---------GG
.......(((..(((((((.(.(((((................))))).)......(..(((((((...)))))))..).)))))))..))---------). ( -27.29)
>DroYak_CAF1 132198 101 + 1
AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGUAGGGCUUGACUGCCUGGAGAAAUUUCAGGUGG-GGCAAUGGAAAUGGGGAAAUGG
.((((..((..((((((((.(.(((((................))))).)......(..(((((((...)))))))..)-))))))))....))..)))).. ( -25.89)
>consensus
AAUUUUACUUGUCAUUGUUGCGUGCUGAAUAAAAGAUGAGAAGCAGUAGAGCUUGACUGCCUGGAGAAAUUUCAGGUGGGGGCAUUGGAAA_________GG
..((((...((((....((((.((((...............)))))))).......(..(((((((...)))))))..).))))...))))........... (-21.24 = -20.92 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:28 2006