| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,875,985 – 1,876,083 |
| Length | 98 |
| Max. P | 0.608524 |
| Location | 1,875,985 – 1,876,083 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 88.18 |
| Mean single sequence MFE | -19.80 |
| Consensus MFE | -15.72 |
| Energy contribution | -15.72 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1875985 98 - 27905053 CAAGGACCUGACCAAUCUGCAAAUACCUUGAGUAAAGGUAAAAA---------AAAAGGGAAACAACGACUGGCAACUUUAGUUUGUGACAUCCGGUCCAUUUAGCC ...(((((...............((((((.....))))))....---------.....(((....((((((((.....)))).))))....))))))))........ ( -22.50) >DroSec_CAF1 34072 97 - 1 CAAGGAACUGACCAAACUGCAAAUACCUUGAGUAAAGGUAAAA----------AAAAGGGAAACAACGACUGGCAACUUUAGUUUGUGACAUCCGGUCCAUUUAGCC ....(((..((((..........((((((.....))))))...----------.....(((....((((((((.....)))).))))....)))))))..))).... ( -18.80) >DroSim_CAF1 34673 97 - 1 CAAGGACCUGACCAAACUGCAAAUACCUUGAGUAAAGGUAAAA----------AAAAGGGAAACAACGACUGGCAACUUUAGUUUGUGACAUCCGGUCCAUUUAGCC ...(((((.((((((((((....((((((.....))))))...----------.....(....).......(....)..))))))).)...)).)))))........ ( -23.50) >DroEre_CAF1 34647 95 - 1 CAAAGACCUGACCAAACUUCAAAUACCUUCAGUAAAGGUAAAAAAGA------------AACAAAACGACUGGCAACUUUAGUUUGUGACAUCCGGUCCAUUUAGCC ....((((.((............((((((.....)))))).....(.------------.(((((......(....).....)))))..).)).))))......... ( -15.80) >DroYak_CAF1 40243 107 - 1 CAAAGACCUGACCAAACUUCAAAUACCUUCAGUAAAGGUAAAAAUAAAAAAAAAGAAGGAAAACAACGACUGACAACUUUAGUUUGUGACAUCCGGUCCAUUUAGCC .........((((..........((((((.....)))))).................(((..(((..((((((.....)))))))))....)))))))......... ( -18.40) >consensus CAAGGACCUGACCAAACUGCAAAUACCUUGAGUAAAGGUAAAAA_________AAAAGGGAAACAACGACUGGCAACUUUAGUUUGUGACAUCCGGUCCAUUUAGCC .........((((..........((((((.....)))))).................(((.....((((((((.....)))).))))....)))))))......... (-15.72 = -15.72 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:38 2006