Locus 4975

Sequence ID 3R_DroMel_CAF1
Location 13,096,473 – 13,096,565
Length 92
Max. P 0.864885
window8137

overview

Window 7

Location 13,096,473 – 13,096,565
Length 92
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 78.06
Mean single sequence MFE -27.14
Consensus MFE -17.18
Energy contribution -18.35
Covariance contribution 1.17
Combinations/Pair 1.28
Mean z-score -1.79
Structure conservation index 0.63
SVM decision value 0.84
SVM RNA-class probability 0.864885
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13096473 92 + 27905053
---UUCAUCGUUGCUGAUUUGCCACGACGCC-UCU-GCACCAUGUGGC-UCGU-----UGAGUUGAGUUGGCAAAAUGGAAGCCAUUAAGCGAAUGGUUUCCC
---.......((((..(((((((((((.(((-.(.-.......).)))-))).-----)).).)))))..))))...((((((((((.....)))))))))). ( -31.50)
>DroSec_CAF1 126269 92 + 1
---UUAUACGUUGCAGAUUUGCCACGACGCC-UCU-GCACCAUGUGGC-UCGU-----UGAGUUGAGUUGGCAAAAUGGAAGCCAUUAAACGAAUGGUUUCCC
---.......((((.((((((((((((.(((-.(.-.......).)))-))).-----)).).)))))).))))...((((((((((.....)))))))))). ( -28.20)
>DroSim_CAF1 111728 92 + 1
---UUAUACGUUGCAGAUUUGCCACGACGCC-UCU-GCACCAUGUGGC-UCGU-----UGAGUUGAGUUGGCAAAAUGGAAGCCAUUAAACGAAUGGUUUCCC
---.......((((.((((((((((((.(((-.(.-.......).)))-))).-----)).).)))))).))))...((((((((((.....)))))))))). ( -28.20)
>DroEre_CAF1 116740 83 + 1
---UUUAA--------------CACGACGCC-CCU-GCAGCAUGUGGC-UUGUUAAGUUGAGUUGAGUUGGCAAAAUGGAAGCCAUUAAACGAAUGGUUUCCC
---(((((--------------(.((((...-...-(((((.....))-.)))...)))).))))))..........((((((((((.....)))))))))). ( -22.80)
>DroYak_CAF1 121194 92 + 1
---UUUACCAUUGCAGAUUUUCCACGACGCC-ACU-GCACCAUGUGGC-UUGU-----UGAGUUGAGCUGGGAAAAUGGAAGCCAUUAAACGAAUGGUUUCCC
---....((...((.(((((...((((.(((-((.-.......)))))-))))-----.)))))..))..)).....((((((((((.....)))))))))). ( -30.70)
>DroAna_CAF1 117738 94 + 1
CCCAUCCCUAUUGC----UUACACCAGCGUCUUCUGGUUCUUUGUGGCAUUUU-----UGAAUUGCGUUGCCAAAAUGGAAGCCAUUAAACAAAUGGCAUCCC
..............----....(((((......)))))......(((((....-----..........)))))....(((.((((((.....)))))).))). ( -21.44)
>consensus
___UUAAACGUUGCAGAUUUGCCACGACGCC_UCU_GCACCAUGUGGC_UCGU_____UGAGUUGAGUUGGCAAAAUGGAAGCCAUUAAACGAAUGGUUUCCC
.................(((((((((((((......)).((....))..............))))...)))))))..((((((((((.....)))))))))). (-17.18 = -18.35 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:23 2006