Locus 4974

Sequence ID 3R_DroMel_CAF1
Location 13,092,675 – 13,092,781
Length 106
Max. P 0.900458
window8136

overview

Window 6

Location 13,092,675 – 13,092,781
Length 106
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 87.74
Mean single sequence MFE -32.32
Consensus MFE -22.88
Energy contribution -24.36
Covariance contribution 1.48
Combinations/Pair 1.20
Mean z-score -2.58
Structure conservation index 0.71
SVM decision value 1.01
SVM RNA-class probability 0.900458
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13092675 106 - 27905053
UUUUGCUCUGUUUGCUUUCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUUAUACCCAGCAUUGCAUUUGGGUACAGGGCCAUACCGAACUUAUC-----AUAUAUC
....((((((........))))))((((((.((((.(((((((((....)))....(((((((........)))))))..))))))...))))....))-----))))... ( -34.60)
>DroSec_CAF1 122424 111 - 1
UUUUGCUCUGUUUGCUUUCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUUAUACUCAGUAUUGCAUUUGGGCACAGGGCUAUACCGAACUUAUCAUAUCAUAUAUC
....((((((........))))))((((((.((((.((((((.((((.(((....((((...)))).)))...))))...))))))...))))....))))))........ ( -34.40)
>DroSim_CAF1 107783 111 - 1
UUUUGCUCUGUUUGCUUUCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUUAUACCCAGUAUUGCAUUUGGUUACUGGGCUAUACCGAACUUAUCAUAUCAUAUAUC
....((((((........))))))((((((.((((.((((((((((..(((....((((...)))).)))...))...))))))))...))))....))))))........ ( -30.80)
>DroEre_CAF1 113282 110 - 1
UUUUGCUCUGUUUGCCUUCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUCACACCCAGUACUGCUGUUG-GCACGCGGCUAUGCCGAUUUCACCAUAUCAUAUAUC
....((((((........))))))(.((((..(((.((((((((((..(((....)))..(((.....)))..)-)).)).)))))...)))..)))))............ ( -33.10)
>DroYak_CAF1 116572 110 - 1
UUUUGCUCUGUUUGCUUGCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUCAUACCCAGUAGUGUUUUUG-GCACGUGGCUAUACCGAUUCUACCAUAUCCUAUAUC
....(((((((......)))))))(((.((..(((.((((((((((........(((........))).....)-)).)).)))))...))).)))))............. ( -28.72)
>consensus
UUUUGCUCUGUUUGCUUUCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUUAUACCCAGUAUUGCAUUUGGGCACAGGGCUAUACCGAACUUAUCAUAUCAUAUAUC
....((((((........))))))..((((.((((.((((((.((((.(((...(((.....)))..)))...))))...))))))...)))).))))............. (-22.88 = -24.36 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:22 2006