| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,091,610 – 13,091,700 |
| Length | 90 |
| Max. P | 0.908276 |
| Location | 13,091,610 – 13,091,700 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 68.85 |
| Mean single sequence MFE | -14.30 |
| Consensus MFE | -9.81 |
| Energy contribution | -8.60 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13091610 90 - 27905053 AACCCUCGAUGAAGUAAAUAAAAAGUUGAUAACAAAAAUUUGACUUUGAAUCAUGAGCAAUCAUUAAUUAUUUAACAUGGAUUAACAAGU------------------ .....((.(((...((((((((((((..(..........)..))))).....((((....))))...))))))).))).)).........------------------ ( -13.50) >DroSec_CAF1 121393 89 - 1 AACCUUCGAUGAAAUAAAUAAGAAGUUGAUAAACAAAAUUUGACUAUGAAUCAUGAGCAAUCAUUAUUUAUUAAACGUGGGUAAA-AAGU------------------ .((((.((...............(((..(..........)..)))((((((.((((....)))).))))))....)).))))...-....------------------ ( -14.80) >DroEre_CAF1 112213 107 - 1 UACUCUCGAUUAAAUAAAUCAAAAGCUGAUACAAAAGGUUUGGCUUUGAAUCUUGAGCAAUCAUUACCUAUUAGGAAUGGACAAA-AAACGAAUAAUUAAAAAUGCAA ..(((..((((..........(((((..(.((.....)))..))))).))))..)))...(((((.((.....))))))).....-...................... ( -14.60) >consensus AACCCUCGAUGAAAUAAAUAAAAAGUUGAUAAAAAAAAUUUGACUUUGAAUCAUGAGCAAUCAUUAAUUAUUAAACAUGGAUAAA_AAGU__________________ .....((.(((..........(((((..(..........)..)))))......(((....)))............))).))........................... ( -9.81 = -8.60 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:20 2006