| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,089,064 – 13,089,165 |
| Length | 101 |
| Max. P | 0.969048 |
| Location | 13,089,064 – 13,089,165 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.00 |
| Mean single sequence MFE | -16.62 |
| Consensus MFE | -12.76 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.969048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13089064 101 - 27905053 UACCCCCCCCCCCCCCCAUACAGAUAACCGGCAACAGUUCAAAGUUUCUUUAUUU-UUCCUUC-----AUUUUUGUUUCUGUUUGUUUCUAUUUAUUUGUUGUGGCA ...............((((((((((((..((((((((..(((((...........-.......-----..)))))...))).))))).....))))))).))))).. ( -15.15) >DroSec_CAF1 109163 96 - 1 ----CCCCC--ACCACCCCACAGAUAACCGGCAACAGUUCAAAGUUUCUUUAUUUUUUCCCCC-----AUUUUUGUUUCUGUUUGUUUCUAUUUAUUUGUUGGGGCA ----.....--....((((((((((((..((((((((..(((((...................-----..)))))...))).))))).....))))))).))))).. ( -19.50) >DroSim_CAF1 104236 95 - 1 ----CCCCC--ACCACCCCACAGAUAACCGGCAACAGUUCAAAGUUUCUUUAUUU-UUCCCCC-----AUUUUUGUUUCUGUUUGUUUCUAUUUAUUUGUUGUGGCA ----.....--.((((...((((((((..((((((((..(((((...........-.......-----..)))))...))).))))).....)))))))).)))).. ( -15.55) >DroEre_CAF1 109752 85 - 1 ----CCCC----------CACAGAUAACCGGCAACAGUUCAAAGUUUCUUUAUUU--CCCUCCAUUGGAUUUUUGUUUCUGUUUGU------UUAUUUGUUGUGGCA ----...(----------(((((......((((((((..(((((.(((.......--.........))).)))))...))).))))------)......)))))).. ( -16.29) >consensus ____CCCCC__ACCACCCCACAGAUAACCGGCAACAGUUCAAAGUUUCUUUAUUU_UUCCCCC_____AUUUUUGUUUCUGUUUGUUUCUAUUUAUUUGUUGUGGCA ...............((((((((((((..((((((((..(((((..........................)))))...))).))))).....))))))).))))).. (-12.76 = -13.70 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:19 2006