| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,085,928 – 13,086,025 |
| Length | 97 |
| Max. P | 0.581497 |
| Location | 13,085,928 – 13,086,025 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 81.57 |
| Mean single sequence MFE | -25.99 |
| Consensus MFE | -16.64 |
| Energy contribution | -17.95 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13085928 97 - 27905053 CUAAUGCAGGAGCAUGGAAUUGACAGGCACCAUGCUCCGAC-AGACCAAGACAGUGGGCAAUAAAGUUCCAA-AGGCUAGCGCUACAGAACGAUGUGCA ....((..(((((((((............)))))))))..)-)..(((......)))(((.....((((...-.(((....)))...))))....))). ( -28.60) >DroPse_CAF1 108949 95 - 1 CUAAUACAGAGGCAUUCAAUUGACACGCUGCUUGCCCCAACUAGCCGAAGACAAUAGGCAAUAAAGCAGCAA-AAUCAACC---ACAGCAUGAUGUGCA ....((((...((......((((...((((((((......)..(((..........)))....)))))))..-..))))..---...))....)))).. ( -17.10) >DroSec_CAF1 105513 97 - 1 CUAAUGCAGGGGCAUGGAAUUGACAGGCACCAUGCUCCGAC-AGCCCAAGACAAUGGGCAAUAAAGUUCCGA-AGGCUAGCACUACAGAACGAUGUGCA ....(((.(((((((((............))))))))).((-((((((......)))))......((((.(.-((.......)).).))))..)))))) ( -31.90) >DroSim_CAF1 100583 97 - 1 CUAAUGCAGGGGCAUGGAAUUGACAGGCACCAUGCUCCGAC-AGCCCAAGACAAUGGGCAAUAAAGUUCCGA-AGGCUAGCACUACAGAACGAUGUGCA ....(((.(((((((((............))))))))).((-((((((......)))))......((((.(.-((.......)).).))))..)))))) ( -31.90) >DroYak_CAF1 109210 97 - 1 CUAAUGCAGGAGCAUGGAAUUGACAGGCACCGCGCUCCAAC-AGCACAAGACAAUGGGCAAUAAACUUGCAG-AGCCUAGCACUUCAGAACGAUGUGCA ((..(((.(((((.(((............))).)))))...-.)))..))....(((((.............-.)))))((((.((.....)).)))). ( -23.94) >DroAna_CAF1 107015 98 - 1 CUAAUGCAGGGGCAUGGAAUUGACAAGCAGCAUGCUCGAAC-AGCCCAAGACAAUAGGCAAUAAAGUGGUAACAGGCAACAAACAUAGCCUAAUGUGGA .........((((.((...((((...((.....)))))).)-)))))...(((.(((((......((....)).(....).......))))).)))... ( -22.50) >consensus CUAAUGCAGGGGCAUGGAAUUGACAGGCACCAUGCUCCAAC_AGCCCAAGACAAUGGGCAAUAAAGUUCCAA_AGGCUAGCACUACAGAACGAUGUGCA ....(((((((((((((............))))))))).....(((((......)))))....................................)))) (-16.64 = -17.95 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:18 2006