Locus 497

Sequence ID 3R_DroMel_CAF1
Location 1,872,933 – 1,873,043
Length 110
Max. P 0.597810
window801

overview

Window 1

Location 1,872,933 – 1,873,043
Length 110
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 87.70
Mean single sequence MFE -23.87
Consensus MFE -20.17
Energy contribution -19.75
Covariance contribution -0.42
Combinations/Pair 1.10
Mean z-score -1.66
Structure conservation index 0.84
SVM decision value 0.13
SVM RNA-class probability 0.597810
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1872933 110 + 27905053
UACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGCA-U----UGGUGAUAG-AG--GG
................((.(((((((.......((((((((((....(((.....)))..((((((......))))))...))).)))))))....-.----.))))).))-.)--). ( -24.02)
>DroPse_CAF1 22713 115 + 1
UACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGUCAGGGGGUGGGGAGGG-GG--UG
..............((((.((((((((.....(((((((((((....(((.....)))..((((((......))))))...))).))))))).).....))))))))...)-))--). ( -28.30)
>DroGri_CAF1 29616 111 + 1
AACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGUAAAUGACAAAUAUUCUUGUUAAGCGGCAUAAAUGCAGCA-G----UGGCAGUAACAGGA--
...............(((...............((((((((((....(((.....)))..((((((......))))))...))).))))))).((.-.----..)).......)))-- ( -21.40)
>DroWil_CAF1 27201 109 + 1
UACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCUAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGUGGCA-G----CAAGGAGAA-AG--G-
...................((((........((((((((((((....(((.....)))..((((((......))))))...))).)))))))))..-.----...))))..-..--.- ( -18.74)
>DroMoj_CAF1 29081 111 + 1
AACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGCA------CAGCAAUAGCAGCU-G
...(((((...(((((.......))))))))))((((((((((....(((.....)))..((((((......))))))...))).)))))))....------((((.......)))-) ( -24.60)
>DroPer_CAF1 23031 112 + 1
UACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGUCAG----UGGGGAGGGGAG--UG
...............(((.((((..........((((((((((....(((.....)))..((((((......))))))...))).)))))))......----....))))))).--.. ( -26.15)
>consensus
UACGAAAUAUGUAAAUCCACUUCAUUUAAUUUCGCAUUUAGCCAAAAUGCUAACAGCAAAUGACAAAUAUUCUUGUUAAGAGGCAUAAAUGCAGCA_G____UGGGGAGAG_AG___G
...(((((...(((((.......))))))))))((((((((((....(((.....)))..((((((......))))))...))).))))))).......................... (-20.17 = -19.75 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:37 2006