| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,083,019 – 13,083,118 |
| Length | 99 |
| Max. P | 0.613777 |
| Location | 13,083,019 – 13,083,118 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.38 |
| Mean single sequence MFE | -22.43 |
| Consensus MFE | -11.86 |
| Energy contribution | -12.67 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13083019 99 + 27905053 GUGGGUGUCGCAUUGCUUUUAAUAAUGGCGCAUAAAUGUUUUUUAACAACGCCAAACAAAGGCAAUCACAAAAGCCCCACAGAAAACCA-AACCGAACCG ((((((((.(.(((((((((.....(((((......((((....)))).)))))...))))))))))))).....))))).........-.......... ( -22.80) >DroVir_CAF1 100605 87 + 1 GUGGGUGUCGCAUUGCUUUUGAUUAUGGCGCAUAAAUGUUUUUUAACAACGGCUAACAAAAGCAAUCGAA-AGGC------GAAAAGCG------AAAUG ....((.((((((((((((((.(((.(.((......((((....)))).)).))))))))))))))(...-.)))------))...)).------..... ( -21.30) >DroPse_CAF1 106353 84 + 1 GUGGGUGUCGCAUUGCUUUUGAUAAUGGCGCAUAAAUGUUUUUUAACAACAGCAAACAAAGGCAAUCG-AAAAGCCCC---GAAAACG------------ (.((((.(((.((((((((((......((.......((((....))))...))...))))))))))))-)...)))))---.......------------ ( -22.80) >DroMoj_CAF1 111536 87 + 1 GUGGGUGUCUCAUUGCUUUUGAUUAUGGUGCAUAAAUGUUUUUUAACAACGGCAAACAAAAGCAAUCGAA-AGAC------GAAAAACG------AAAAA ((...(((((.((((((((((.......(((.....((((....))))...)))..))))))))))....-))))------)....)).------..... ( -18.30) >DroAna_CAF1 104077 91 + 1 AUGGGUGUCGCAUUGCUUUUGAUAAUGGCGCAUAAAUGUUUUUUAACAACGCCAAACAAAGGCAAUCGCA-AAGCCCCUUAGAAAACCGAAA-------- ..((((...((((((((((((....(((((......((((....)))).)))))..)))))))))).)).-..))))...............-------- ( -26.60) >DroPer_CAF1 172679 84 + 1 GUGGGUGUCGCAUUGCUUUUGAUAAUGGCGCAUAAAUGUUUUUUAACAACAGCAAACAAAGGCAAUCG-AAAAGCCCC---GAAAACG------------ (.((((.(((.((((((((((......((.......((((....))))...))...))))))))))))-)...)))))---.......------------ ( -22.80) >consensus GUGGGUGUCGCAUUGCUUUUGAUAAUGGCGCAUAAAUGUUUUUUAACAACGGCAAACAAAGGCAAUCG_A_AAGCCCC___GAAAACCG___________ ..((((..((.((((((((((...(((...)))...((((....))))........)))))))))))).....))))....................... (-11.86 = -12.67 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:17 2006