Locus 4968

Sequence ID 3R_DroMel_CAF1
Location 13,078,402 – 13,078,500
Length 98
Max. P 0.809544
window8130

overview

Window 0

Location 13,078,402 – 13,078,500
Length 98
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 94.06
Mean single sequence MFE -32.85
Consensus MFE -27.83
Energy contribution -28.57
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.85
SVM decision value 0.64
SVM RNA-class probability 0.809544
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13078402 98 - 27905053
UUAAUAAAAGCGCAUUUAUGCGUUUCUGCGGCAAUUAAGUGCAGCAGAGUGCAGCCGACAUUCUGAUGC------UGCAUGCCCCCAAUCGGCGCUCGGAAAUC
.........(((((....)))))(((((.(((......((((((((((((((....).)))))...)))------)))))(((.......)))))))))))... ( -31.70)
>DroSec_CAF1 98196 98 - 1
UUAAUAAAAGCGCAUUUAUGCGUUUCUGCGGCAAUUAAGUGCUGCAGAGUGCAGCCGACGUUCUGAUGC------UGCAUGCCCCCAAUCGGCGCUCGGAAAUC
........((((((....))))))(((((((((......)))))))))(((((((............))------)))))(((.......)))........... ( -32.50)
>DroSim_CAF1 92607 97 - 1
UUAAUAA-AGCGCAUUUAUGCGUUUCUGCGGCAAUUAAGUGCUGCAGAGUGCAGCCGACGUUCUGAUGC------UGCAUGCCCCCAAUCGGCGCUCGGAAAUC
.......-((((((....))))))(((((((((......)))))))))(((((((............))------)))))(((.......)))........... ( -32.50)
>DroEre_CAF1 98737 103 - 1
UUAAUAAAAGCGCAUUUAUGCGUUUCUGCGGCAAUUAAGUGCUGCAGAGUGCAGCCCACGUUCUGAUACUGAUGCUGCAUGCC-CCAAUCGGCGCUCGGAAAUC
........((((((....))))))(((((((((......)))))))))(((((((.((.((......))))..)))))))(((-......)))........... ( -34.70)
>consensus
UUAAUAAAAGCGCAUUUAUGCGUUUCUGCGGCAAUUAAGUGCUGCAGAGUGCAGCCGACGUUCUGAUGC______UGCAUGCCCCCAAUCGGCGCUCGGAAAUC
........((((((....))))))(((((((((......)))))))))(.((.(((((......(((((.......)))).)......))))))).)....... (-27.83 = -28.57 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:16 2006