Locus 4965

Sequence ID 3R_DroMel_CAF1
Location 13,063,689 – 13,063,797
Length 108
Max. P 0.659604
window8126

overview

Window 6

Location 13,063,689 – 13,063,797
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 95.68
Mean single sequence MFE -22.98
Consensus MFE -20.65
Energy contribution -20.77
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.91
Structure conservation index 0.90
SVM decision value 0.26
SVM RNA-class probability 0.659604
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13063689 108 - 27905053
AUACUUAGAGUUAUAUUUCAUUCAGCAUAGGCUUUUGAUACUGUGCACCUUGUAUCUUCUUGCUAGGAUAACUAUACACAUUGCCACGAUAUAAGCCUCUAAGAUCAU
...((((((((((((((.......((((((..........)))))).(((.(((......))).)))....................)))))))..)))))))..... ( -24.40)
>DroSec_CAF1 83732 108 - 1
AUACUUGGAAUUAUAUUUCAUUCAGCAUAGGCUUUCGGUACUGUGCACCUUGUAUCUUCUUGCUAGGAUAACUAUACACAUUGCCACGAUAUAAACCUCUAAGAUCAU
...((((((.(((((((......(((....)))...((((.((((.......((((((......))))))......)))).))))..)))))))...))))))..... ( -22.22)
>DroSim_CAF1 76111 108 - 1
AUACUUGGAAUUAUAUUUCAUUCAGCAUAGGCUUUCGGUACUGUGCACCUUGUAUCUUCUUGCUAGGAUAACUAUACACAUUGCCAUGAUAUAAGCCGCUAAGAUCAU
...(((((..(((((((......(((....)))...((((.((((.......((((((......))))))......)))).))))..)))))))....)))))..... ( -22.32)
>consensus
AUACUUGGAAUUAUAUUUCAUUCAGCAUAGGCUUUCGGUACUGUGCACCUUGUAUCUUCUUGCUAGGAUAACUAUACACAUUGCCACGAUAUAAGCCUCUAAGAUCAU
...((((((.(((((((.......((((((..........)))))).(((.(((......))).)))....................)))))))...))))))..... (-20.65 = -20.77 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:13 2006