Locus 4963

Sequence ID 3R_DroMel_CAF1
Location 13,056,709 – 13,056,808
Length 99
Max. P 0.508562
window8123

overview

Window 3

Location 13,056,709 – 13,056,808
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.24
Mean single sequence MFE -36.80
Consensus MFE -22.16
Energy contribution -23.04
Covariance contribution 0.88
Combinations/Pair 1.12
Mean z-score -1.85
Structure conservation index 0.60
SVM decision value -0.05
SVM RNA-class probability 0.508562
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13056709 99 - 27905053
AACGCAUUUUUUCAUUACUUUUCCACUGGCCGGGGGCCAAAACGCGAGAUUCGUGGCUAUUGGGUAUCG-------GGCAUUGGUUUGCUGG--------------CUAGUGGGUAAAAA
.....................(((((((((((((((((((..(.(((.(((((.......))))).)))-------.)..))))))).))))--------------))))))))...... ( -35.20)
>DroSec_CAF1 76737 97 - 1
AACGCAUUUUUUCAUUACUUUUCCACUGGCCGGGGGCCAAAACGCGAGGUCCGUGGCUAUUGGGUAUCG-------GGCAUUGGGUUGCUGG--------------CUAGUGGGUA--AA
.....................((((((((((((.((((....(....)(((((..(((....)))..))-------)))....)))).))))--------------))))))))..--.. ( -39.20)
>DroSim_CAF1 69176 97 - 1
AACGCAUUUUUUCAUUACUUUUCCACUGGCCGGGGGCCAAAACGCGAGGUCCGUGGCUAUUGGGUAUCG-------GGCAUUGGGUUGCUGG--------------CUAGUGGGUA--AA
.....................((((((((((((.((((....(....)(((((..(((....)))..))-------)))....)))).))))--------------))))))))..--.. ( -39.20)
>DroEre_CAF1 77161 110 - 1
AACGCAUUUUUUCAUUACUUUUCCACUGGCCGGCGGCCAAAAUGCGAGGCUCGUGGCUAUUGGGCAUCG--------GGAUUGGGUUGCUGGGUGCUGGAUACUGACUACUGGGUA--CA
.((.((.....(((.((....((((..(.(((((((((.((.(.(((.(((((.......))))).)))--------.).)).))))))))).)..)))))).)))....)).)).--.. ( -32.90)
>DroYak_CAF1 79174 118 - 1
AACGCAUUUUUUCAUUACUUUUCCACUGGCCGUGGGCCAAAAUGCGAGCUUCGUGGCUAUUGGGUAUCUGGUAUCGGGUAUUGGGUUGCUGGGUGCAGGAUACUGACUACUGGGUA--AA
..(((((((.................(((((...)))))))))))).(((..((((....(.(((((((.(((((.((((......)))).))))).))))))).)))))..))).--.. ( -37.52)
>consensus
AACGCAUUUUUUCAUUACUUUUCCACUGGCCGGGGGCCAAAACGCGAGGUUCGUGGCUAUUGGGUAUCG_______GGCAUUGGGUUGCUGG______________CUAGUGGGUA__AA
.((.((((.............((((.((((((.(((((.........))))).)))))).))))............((((......))))..................)))).))..... (-22.16 = -23.04 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:10 2006