| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,047,555 – 13,047,645 |
| Length | 90 |
| Max. P | 0.580139 |
| Location | 13,047,555 – 13,047,645 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 81.46 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -7.74 |
| Energy contribution | -8.78 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13047555 90 - 27905053 AUGUGUAUGUGCAUAUUCAUGUAUCUACACAUUUAAAGUGCUAAAUUUAUG-AACGCAUACAAUUCGCAAUUCAAAAUCUUGAAAUGCAUU ...((((((((....((((((.((.(((((.......))).)).)).))))-))))))))))....(((.(((((....))))).)))... ( -20.90) >DroSec_CAF1 67680 90 - 1 AUGUGUGUGUGCAUAUUUAUGUAUCUACACAUUUAAAGUGGUAAAUUUAUG-AAUGCAUACAAUACGCAUGGCAAAGCCUUUAAAUGCAUA ..((((((((((((..(((((.((.(((.(((.....)))))).)).))))-))))))))).))))(((((((...))).....))))... ( -22.80) >DroSim_CAF1 59883 90 - 1 AUGUGUGUGUGCAUAUUUAUGUAUCUACACAUUUAAAGUGGUAAAUUUAUG-AAUGCAUACAAUACGCAUGGCGAAGCCUUUAAAUGCAUA ..((((((((((((..(((((.((.(((.(((.....)))))).)).))))-))))))))).))))(((((((...))).....))))... ( -22.80) >DroEre_CAF1 68346 90 - 1 AUGUGUAUAUGCAUAUUUAUGUAGCUAC-CAUUUAAAGUGCUAAAUUUAUGCAAUAAAUGCAAUACGCAAUCCGCAGUGCUUAAAUGCCUU ....(((..(((((....)))))..)))-(((((((.(..((.......((((.....))))....((.....))))..)))))))).... ( -17.00) >DroYak_CAF1 69618 85 - 1 AUCUGUAUAUGCAUAUUUAUGUACCGAC-CAUUUAAAGUGCUAAAUUAAUGCAAAAA-----AUACGCCAUCCAAAGUCUUUAAAUGCGUU ....(((((((......))))))).(((-(((((((((.(((........((.....-----....)).......)))))))))))).))) ( -13.26) >consensus AUGUGUAUGUGCAUAUUUAUGUAUCUACACAUUUAAAGUGCUAAAUUUAUG_AAUGCAUACAAUACGCAAUCCAAAGUCUUUAAAUGCAUU (((((((.((((((....)))))).)))))))........................................................... ( -7.74 = -8.78 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:03 2006