Locus 496

Sequence ID 3R_DroMel_CAF1
Location 1,872,554 – 1,872,652
Length 98
Max. P 0.587506
window800

overview

Window 0

Location 1,872,554 – 1,872,652
Length 98
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 77.73
Mean single sequence MFE -23.29
Consensus MFE -15.55
Energy contribution -15.58
Covariance contribution 0.03
Combinations/Pair 1.06
Mean z-score -1.19
Structure conservation index 0.67
SVM decision value 0.11
SVM RNA-class probability 0.587506
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1872554 98 - 27905053
G----AGCCUU--CGGAG--CCCCCGCGGAUUACAUAAAGUUGCAAAAUUUU-CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCCCCGGCGC--UCGUCCUUUA
(----(((..(--(((.(--(....((((..((((((((((..((.......-.))..)).......))))))))))))........)).)))).))--))........ ( -25.51)
>DroPse_CAF1 22361 86 - 1
C----GGC-GU--CGCAUUCCCCCCGCGGAUUACACAAAGUUGCAGAAUUUU-CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCUCUGG---------------
.----(((-.(--(((.........))))...(((((((((..((((....)-)))..)).......))))))))))(((......))).....--------------- ( -24.51)
>DroGri_CAF1 29211 99 - 1
CGCCCAGC-AUUCCGCAC--UCCCAGCGGAUUACACAAAGUUGCAAAAUUUU-CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCAA-GCC----ACGCGCU-CU
(((...((-..(((((..--.....))))).((((((((((..((.......-.))..)).......))))))))..(((......)))..-)).----..)))..-.. ( -24.71)
>DroMoj_CAF1 28752 102 - 1
CGCCCAGC-AA--CGCAU--UCCCAGCGGAUUACACAAAGUUGCAAAAUUUUGCUGUGACAAAUUUAUUUGUAUGCCGCAUUAUAUUGCAC-GACACUCACGCGCU-UA
.....(((-..--.(((.--.....((((..(((((((((((....))))))).))))(((((....)))))...)))).......)))..-(.....)....)))-.. ( -19.52)
>DroAna_CAF1 21472 100 - 1
C----GCCCGU--CGUCU--UCCCCGCGGAUUACACAAAGUUGCAAAAUUUU-CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCUCUGGCUCUCUCUUCCUUUA
.----(((.(.--.....--.....((((..((((((((((..((.......-.))..)).......))))))))))))...........).))).............. ( -20.36)
>DroPer_CAF1 22666 99 - 1
C----GGC-GU--CGCAUUCCCCCCGCGGAUUACACAAAGUUGCAGAAUUUU-CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCUCUGGUUC--UGGUUCUGGC
.----(((-.(--(((.........))))...(((((((((..((((....)-)))..)).......))))))))))(((......))).(..(...--.....)..). ( -25.11)
>consensus
C____AGC_GU__CGCAU__CCCCCGCGGAUUACACAAAGUUGCAAAAUUUU_CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCUCUGGC_C__UCGUCCU_UA
.........................((((..((((((((((..((.........))..)).......)))))))))))).............................. (-15.55 = -15.58 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:36 2006