| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,037,687 – 13,037,797 |
| Length | 110 |
| Max. P | 0.532276 |
| Location | 13,037,687 – 13,037,797 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 83.08 |
| Mean single sequence MFE | -27.18 |
| Consensus MFE | -18.62 |
| Energy contribution | -18.37 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13037687 110 + 27905053 --GUAGCCAGGUGGGCAGUGGGUCGUUCUGGCUACAACUUCGAUGUCCAUUUUGUGGCCAUAAUGCUCGGCCAUAAGUUUUGCACAGCAAAAACAUAAACAAGCUAAAUCAA --(((((((((..(((.....)))..)))))))))......(((......(((((((((.........)))))))))((((((...))))))...............))).. ( -33.60) >DroPse_CAF1 65127 95 + 1 --GUGUCCAGGUUG---------------AGCUACAACUUCGAUGUCCAUUUUGUGGCCAUAAUGCUUGGCCAUAAGUUUUGCCCGGCAAAAACAUAAACAAGCUAAAUCAA --.......((((.---------------((((.................((((((((((.......))))))))))((((((...)))))).........)))).)))).. ( -24.10) >DroEre_CAF1 58066 96 + 1 ----------------AGUGGGUCGUUCCGGCUACAACUUCGAUGUCCAUUUUGUGGCCAUAAUGCUCGGCCAUAAGUUUUGCCCGGCAAAAACAUAAACAAGCUAAAUCAA ----------------(((..((......((((((((..(.(....).)..))))))))....((((.(((.(......).))).)))).........))..)))....... ( -21.70) >DroYak_CAF1 59510 112 + 1 CAGUGGCCAGGUUGGCAGUGGGUCGUUCUGGCUACAACUUCGAUGUCCAUUUUGUGGCCAUAAUGCCCGGCCAUAAGUUUUGCACAGCAAAAACAUAAACAAGCUAAAUCAA ..((((((((..((((.....))))..))))))))......(((......(((((((((.........)))))))))((((((...))))))...............))).. ( -35.00) >DroAna_CAF1 57136 103 + 1 CAGUCACCAGGUAGCCAGGG---------AGCUACAACUUCGAUGUCCAUUUUGUGGCCAUAAUGCUUGGCCAUAAGUUUUGCCCAGCAAAAACAUAAACAAGCUAAAUCAA .(((......(((((.....---------.))))).......((((....((((((((((.......))))))))))((((((...))))))))))......)))....... ( -24.60) >DroPer_CAF1 130969 95 + 1 --GUGUCCAGGUUG---------------AGCUACAACUUCGAUGUCCAUUUUGUGGCCAUAAUGCUUGGCCAUAAGUUUUGCCCGGCAAAAACAUAAACAAGCUAAAUCAA --.......((((.---------------((((.................((((((((((.......))))))))))((((((...)))))).........)))).)))).. ( -24.10) >consensus __GUGGCCAGGUUG__AGUG_________AGCUACAACUUCGAUGUCCAUUUUGUGGCCAUAAUGCUCGGCCAUAAGUUUUGCCCAGCAAAAACAUAAACAAGCUAAAUCAA .............................((((.................(((((((((.........)))))))))((((((...)))))).........))))....... (-18.62 = -18.37 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:57 2006