Locus 4954

Sequence ID 3R_DroMel_CAF1
Location 13,033,457 – 13,033,559
Length 102
Max. P 0.963748
window8107

overview

Window 7

Location 13,033,457 – 13,033,559
Length 102
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 77.40
Mean single sequence MFE -22.47
Consensus MFE -13.06
Energy contribution -15.03
Covariance contribution 1.97
Combinations/Pair 1.09
Mean z-score -2.36
Structure conservation index 0.58
SVM decision value 1.56
SVM RNA-class probability 0.963748
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13033457 102 - 27905053
AUGCUGAAAUGCUAAAAUUGCUA---------------AAAUGCCCAGAUCGGCAGUCAUAAGAAUUUCCAUUUUAUGAUAAGGCCACAAUUUUAUUGCACACCCAACUGGAGAAUC
..((......((.......))..---------------....))((((...(((.(((((((((.......)))))))))...))).((((...)))).........))))...... ( -19.00)
>DroSec_CAF1 53511 93 - 1
AUGCUGAAAU---------GCUA---------------AAAUGCCCAGAUCGGCAGUCAUAAGAAUUUCCAUUUUAUGAUAAGGCCGCAAUUUUAUUGCACACCCAACUGGGGAAUC
..((......---------))..---------------...(.(((((...(((.(((((((((.......)))))))))...)))(((((...)))))........))))).)... ( -25.80)
>DroSim_CAF1 46391 93 - 1
AUGCUAACAU---------GCUA---------------AAAUGCCCAGAUCGGCAGUCAUAAGAAUUUCCAUUUUAUGAUAAGGCCGCAAUUUUAUUGCACACCCAACUGGGGAAUC
..((......---------))..---------------...(.(((((...(((.(((((((((.......)))))))))...)))(((((...)))))........))))).)... ( -25.80)
>DroEre_CAF1 53879 79 - 1
--------------------------------------AAAUGUGCAGAUCGGCAGUCAUAAGCAUUUCCAUUUUAUGAUAAGGCCGCAAUUUUAUUGCACACCCAACUGGGGAAUC
--------------------------------------...(((((((((((((.((((((((.........))))))))...))))..)))....))))))(((....)))..... ( -21.70)
>DroYak_CAF1 55249 117 - 1
AUGCUAAAAUGCUCAAAAUGCUGAAAAGCUGAAAAGCUAAAUGCCCAGAUCGGCAGUCAUAAGAAUUUCCAUUUUAUGAUAAGGCCGCAAUUUUAUUGCACACCCAACUGGGGAAUC
..((......))..............((((....))))...(.(((((...(((.(((((((((.......)))))))))...)))(((((...)))))........))))).)... ( -31.20)
>DroAna_CAF1 53220 85 - 1
-------AAU---------GCCG---------------AGAUGCUCAAAUCAACAGACAUAAGAAUUUCCAUUUUAUGAUAAGACCACAAUUUUAUUACACACACAACCGG-UAACC
-------..(---------((((---------------.(((......)))......(((((((.......)))))))..............................)))-))... ( -11.30)
>consensus
AUGCU_AAAU_________GCUA_______________AAAUGCCCAGAUCGGCAGUCAUAAGAAUUUCCAUUUUAUGAUAAGGCCGCAAUUUUAUUGCACACCCAACUGGGGAAUC
...........................................(((((...(((.(((((((((.......)))))))))...)))(((((...)))))........)))))..... (-13.06 = -15.03 +   1.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:55 2006