Locus 4953

Sequence ID 3R_DroMel_CAF1
Location 13,032,493 – 13,032,586
Length 93
Max. P 0.766537
window8106

overview

Window 6

Location 13,032,493 – 13,032,586
Length 93
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 88.89
Mean single sequence MFE -16.95
Consensus MFE -14.51
Energy contribution -15.07
Covariance contribution 0.56
Combinations/Pair 1.09
Mean z-score -2.07
Structure conservation index 0.86
SVM decision value 0.52
SVM RNA-class probability 0.766537
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13032493 93 + 27905053
ACUCCCUUGCACUGGGAAAAUCAAGGGAAUAAGGACUUUAGAACAACACAAUAUAUAAGAUGUAUAACAUUUAUUGAAUACCAUUAAAGUUAA
..(((((((............))))))).....((((((((.......(((((.....((((.....))))))))).......)))))))).. ( -15.84)
>DroSec_CAF1 52551 93 + 1
AAUCCCUUGCACUGGAAAAAGCAAGGGAAUAAGGACUUUGGAAUAAAAGAAUAUACAAGAUGUAUAACAUAUAUUGAAAACCAUUAAUGUUUA
..((((((((..(....)..))))))))....((.((((......))))..(((((.....)))))..............))........... ( -19.90)
>DroSim_CAF1 45423 93 + 1
ACUCCCUUGCACUGGGAAAAGCAAGGUAAUAAGGACUUUGGAAUAAGAGAAUAUACAAGAUGUAUAACAUAUAUUGAGAACGAUUAAAGUUAA
....((((((..........)))))).......((((((((..........(((((.....))))).((.....)).......)))))))).. ( -15.10)
>consensus
ACUCCCUUGCACUGGGAAAAGCAAGGGAAUAAGGACUUUGGAAUAAAAGAAUAUACAAGAUGUAUAACAUAUAUUGAAAACCAUUAAAGUUAA
..((((((((..........)))))))).....((((((((..........(((((.....))))).((.....)).......)))))))).. (-14.51 = -15.07 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:54 2006