| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,029,644 – 13,029,739 |
| Length | 95 |
| Max. P | 0.936257 |
| Location | 13,029,644 – 13,029,739 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.15 |
| Mean single sequence MFE | -26.02 |
| Consensus MFE | -13.93 |
| Energy contribution | -14.07 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.936257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13029644 95 - 27905053 --------------UCA-ACGUUG-CCG---AGGCGUGGA---AAUAUUGAAAAUGUUCGCAUUAUGAUAAUUUAAUGCAUGUGAUUAUUGAAAAUCAUAAUAAUAUUUUUAUGGC--C- --------------...-......-...---.(.((((((---(((((((.........((((((........)))))).(((((((......))))))).))))))))))))).)--.- ( -22.80) >DroVir_CAF1 53254 109 - 1 -----GAAAAAUGCUUU-GCGUUGACUGGAGAAGCGUGGU---AAUAUUGAAAAUGUGCGCAUUAUGAUAAUUUAAUGCGUGUGAUUAUUGAAAAUCAUAAUAAUAUUUUUAUGGG--CC -----.....((((((.-.(........)..))))))(((---.....(((((((((((((((((........))))))))((((((......))))))....)))))))))...)--)) ( -26.30) >DroWil_CAF1 53267 114 - 1 CAAUGGGUAAAUGCCUG-ACAUUG-UUG---CGGCAUUGAAGUAAUAUUGAAAAUGCUCGCAUUAUGAUAAUUUAAUGCAAGUGAUUAUUGAAAAUCAUAAUAAUAUUUUUAUGGUGCU- ((((((((....)))..-.)))))-..(---((.(((.((((((.(((((.....(((.((((((........)))))).)))((((......)))).))))).)))))).))).))).- ( -26.30) >DroMoj_CAF1 54513 107 - 1 -----GGAAAAUGCUUUGGCGCUGGCUG---AGGCGUGGA---AAUAUUGAAAAUGUGCGCAUUAUGAUAAUUUAAUGCGUGUGAUUAUUGAAAAUCAUAAUAAUAUUUUUAUGGC--UC -----.......((((..((....))..---))))(((((---(((((((.......((((((((........))))))))((((((......))))))..))))))))))))...--.. ( -31.60) >DroAna_CAF1 49711 96 - 1 --------------UCA-ACGCCG-CCC---AGGCGUGGA---AAUAUUGAAAAUGCUCGUAUUAUGAUAAUUUAAUGCGCGUGAUUAUUGAAAAUCAUAAUAAUAUUUUUAUGGC--UC --------------...-..((((-(..---..))(((((---(((((((.....((.(((((((........))))))).))((((......))))....)))))))))))))))--.. ( -24.70) >DroPer_CAF1 123123 96 - 1 --------------CCU-AAGUUG-CUG---GGGCGUGGA---AAUAUUGAAAAUGCUCGCAUUAUGAUAAUUUAAUGCGUGUGAUUAUUGAAAAGCAUAAUAAUAUUUUUAUGGC--UC --------------...-......-..(---((.((((((---(((((((...((((((((((((........)))))))..............)))))..))))))))))))).)--)) ( -24.43) >consensus ______________UCU_ACGUUG_CUG___AGGCGUGGA___AAUAUUGAAAAUGCUCGCAUUAUGAUAAUUUAAUGCGUGUGAUUAUUGAAAAUCAUAAUAAUAUUUUUAUGGC__UC ..................(((((.........)))))...........((((((((...((((((........)))))).(((((((......)))))))....))))))))........ (-13.93 = -14.07 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:53 2006