Locus 4950

Sequence ID 3R_DroMel_CAF1
Location 13,018,653 – 13,018,748
Length 95
Max. P 0.547777
window8099

overview

Window 9

Location 13,018,653 – 13,018,748
Length 95
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 81.48
Mean single sequence MFE -26.98
Consensus MFE -14.94
Energy contribution -16.63
Covariance contribution 1.69
Combinations/Pair 1.21
Mean z-score -2.09
Structure conservation index 0.55
SVM decision value 0.03
SVM RNA-class probability 0.547777
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13018653 95 + 27905053
AGAAAUACUAAAUGCCCAAAAGGGUAUGC-----AUUUGA--UUCCUGACUUCGAUUC--AGGAGACUGUUGUUAAAUUUCGGGAAUGCGAUUCGCAUGGGAAU
.......(((.((((((....))))))((-----..((((--(((((((.((..((.(--((....)))..))..))..)))))))).)))...)).))).... ( -27.30)
>DroSec_CAF1 38726 95 + 1
AACAAUACAAAAUGCCCAAAAGGGUAUGC-----AUUUGA--UUCCUGACUUCGAUUC--AGGAGACUGUUGUUAAAUUUCGGGAAUGCGAUUCGCAUGGGAAU
...........((((((....))))))((-----..((((--(((((((.((..((.(--((....)))..))..))..)))))))).)))...))........ ( -26.40)
>DroEre_CAF1 39322 100 + 1
AAAAAUACUUAAUACCCAAAAGGGUGUGU-UGUGAUUUGAUUUUCCUGCCUUCGAUUUCCUGGG---UGCUGUUAAAUUUCGGGAAUGCGAUUCGCUUGGGAAU
.....(((...((((((....))))))..-.))).......(((((.((..(((..((((((((---...........))))))))..)))...))..))))). ( -27.10)
>DroYak_CAF1 40043 101 + 1
AAAAAUAACUACUACCCAGAAGGGUAUGCAUGCGAUUUGAAUUUCCAGCCUUCGAUUUCCUGGA---UGUUCUUAAAUUUCUGGAAUGCGAUUCGCAUGGGAAU
............(((((....)))))(.(((((((.(((...((((((.....(((((...((.---....)).))))).))))))..))).))))))).)... ( -27.10)
>consensus
AAAAAUACUAAAUACCCAAAAGGGUAUGC_____AUUUGA__UUCCUGACUUCGAUUC__AGGA___UGUUGUUAAAUUUCGGGAAUGCGAUUCGCAUGGGAAU
...........((((((....))))))....((((.(((...(((((((((((........))))..............)))))))..))).))))........ (-14.94 = -16.63 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:47 2006