Locus 4949

Sequence ID 3R_DroMel_CAF1
Location 13,017,573 – 13,017,665
Length 92
Max. P 0.787713
window8098

overview

Window 8

Location 13,017,573 – 13,017,665
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 91.74
Mean single sequence MFE -21.82
Consensus MFE -17.00
Energy contribution -17.20
Covariance contribution 0.20
Combinations/Pair 1.14
Mean z-score -1.78
Structure conservation index 0.78
SVM decision value 0.58
SVM RNA-class probability 0.787713
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13017573 92 + 27905053
GGCGGAUUUAAGCAAAUAUCCACUGUAUUUGCAUAAAUUCAUGUGCUCUUGCUGUGGAGUAAAACAAAUGUGAUGUUGUACUUUAAGUUAAA
((((((((((.((((((((.....)))))))).)))))))....((....))..(((((((.((((.......)))).))))))).)))... ( -21.30)
>DroSec_CAF1 37632 92 + 1
GGCGGAUUUAAGCAAAUAUCCACUGUAUCUGCAUAAAGUCAUGUGCACUUGUUGUAGAGUAAAACAAAUGUGAUGUUGUGCUUUAAGUUAAA
....((((((((((((((((((.(((.((((((..(((((....).))))..)))))).....)))..)).)))))).))).)))))))... ( -20.20)
>DroSim_CAF1 30087 92 + 1
GGCGGAUUUAAGCAAAUAUCCACUGUAUCUGCAUAAAUUCAUCUGCACUUGCUGUGGAGUAAAACAAAUGUGAUGUUGUGCUUUAAGUUAAA
....((((((((((....(((((.(((..((((..........))))..))).)))))....((((.......)))).))).)))))))... ( -20.50)
>DroEre_CAF1 38164 91 + 1
UGUGGACUAAAGCAUAUAGCCACUGUAUUUGCAUAAAUUCAUGUGCUC-UGCUGUGGAGUAAAACAAAUGUGAUGUUGUGCUUUAAGUUAAA
....(((((((((((....((((.(((...(((((......)))))..-))).)))).....((((.......))))))))))).))))... ( -22.90)
>DroYak_CAF1 38862 92 + 1
UGUGGAUUUAAGCAAAUGUCUACUGUAUCUGCAUAAAUUCAUGUGCUCUUGCAGUGGAGUAAAACAAAUGUGAUGUUGUGCUUUAAGUUAAA
....((((((((((....(((((((((...(((((......)))))...)))))))))....((((.......)))).))).)))))))... ( -24.20)
>consensus
GGCGGAUUUAAGCAAAUAUCCACUGUAUCUGCAUAAAUUCAUGUGCUCUUGCUGUGGAGUAAAACAAAUGUGAUGUUGUGCUUUAAGUUAAA
....((((((((......(((((.(((...(((((......)))))...))).)))))(((.((((.......)))).)))))))))))... (-17.00 = -17.20 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:46 2006