Locus 4948

Sequence ID 3R_DroMel_CAF1
Location 13,017,245 – 13,017,340
Length 95
Max. P 0.838307
window8097

overview

Window 7

Location 13,017,245 – 13,017,340
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 93.25
Mean single sequence MFE -18.62
Consensus MFE -17.04
Energy contribution -16.52
Covariance contribution -0.52
Combinations/Pair 1.18
Mean z-score -1.31
Structure conservation index 0.92
SVM decision value 0.74
SVM RNA-class probability 0.838307
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13017245 95 - 27905053
UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCUUUUUGGGGAGCAAUAAUUUUUGGCUUUUGGCACACGUUUCACACACGC
.........((..(((...(((((....)))))((((((((((((((.....))))).....))))))))).....))).))............. ( -18.10)
>DroSec_CAF1 37310 95 - 1
UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCUUUUUGGGGAGCAAUAAUUUUUGGCUUUUGGCACAAGUUUCACACACGC
.............(((...(((((....)))))((((((((((((((.....))))).....))))))))).....)))................ ( -17.90)
>DroSim_CAF1 29764 95 - 1
UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCUUUUUGGGGAGCAAUAAUUUUUGGCUUUUGGCACACGUUUCACACACGC
.........((..(((...(((((....)))))((((((((((((((.....))))).....))))))))).....))).))............. ( -18.10)
>DroEre_CAF1 37866 94 - 1
UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGCCAAAAAUCUCCUUUUUGGGGAGCAAUAAUUUUUGGCUUUUGGCACACGU-UCACACACAC
.........((..(((...(((((....)))))((((((((((((((.....))))).....))))))))).....))).))..-.......... ( -20.80)
>DroYak_CAF1 38552 93 - 1
UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCUU-UUGGGGAGCAAUAAUUUUUGGCUUUUGGCACACGU-UCACACACGC
.........((..(((...(((((....)))))((((((((((((((.-...))))).....))))))))).....))).))..-.......... ( -18.10)
>DroAna_CAF1 38051 91 - 1
UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCAUUUCUUGGGGCAAUAAUUUUUGGUUUUUGCCACAAA----ACACUCUC
.........((((((.....((((....))))((.((((((((((((.....)))))(((......)))))))))))).))))----))...... ( -18.70)
>consensus
UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCUUUUUGGGGAGCAAUAAUUUUUGGCUUUUGGCACACGU_UCACACACGC
.............(((...(((((....)))))((((((((((((((.....))))).....))))))))).....)))................ (-17.04 = -16.52 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:45 2006