Locus 4946

Sequence ID 3R_DroMel_CAF1
Location 13,016,079 – 13,016,169
Length 90
Max. P 0.994944
window8094

overview

Window 4

Location 13,016,079 – 13,016,169
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 90.89
Mean single sequence MFE -22.72
Consensus MFE -20.30
Energy contribution -20.14
Covariance contribution -0.16
Combinations/Pair 1.23
Mean z-score -2.02
Structure conservation index 0.89
SVM decision value 2.53
SVM RNA-class probability 0.994944
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13016079 90 - 27905053
CUGGAUAUUCCUUGGUGUACCAACACCAUUUGAAACCGCUACGUGUAUAUAUAAAUAAAUGUGUGAGCGUGCGGUAUACGAAUUUAUUUU
..((.....)).((((((....))))))((((..(((((.((((.(((((((......))))))).)))))))))...))))........ ( -26.10)
>DroSec_CAF1 36146 90 - 1
CUGAAUAUUCCUUGGUUUACCAACACCAUUUGAAACCGCUGCGUGCAUAUAUAAAUAAAUGUGUGAGGGUGCGUUAUAAGAAUUUAUUUU
.(((((.....((((....)))).....((((.(((((((.((..(((.((....)).)))..))..)))).))).)))).))))).... ( -13.90)
>DroSim_CAF1 28595 90 - 1
CUGAAUAUUCCCUGGUGUACCAACACCAUUUGAAACCGCUGCGUGCAUAUAUAAAUAAAUGUGUGAGCGUGCGGUACACGAAUUUAUUUU
.(((((.(((..((((((....))))))...)))(((((.((((.(((((((......))))))).)))))))))......))))).... ( -26.90)
>DroEre_CAF1 36646 90 - 1
CUAGAUUUUCCUUGGUGUGCCAGCAUCAUUUGGAAGCACUACGUGCAUAUAUAAAUAAAUGUGUGAGCGUGCGGUAUACGAAUUUAUUUU
...........((.(((((((.((.((.....)).))..(((((.(((((((......))))))).))))).))))))).))........ ( -23.50)
>DroYak_CAF1 37344 90 - 1
CUAGAUUUUCCUUGGUGUACCAACACCAUUUGAAACCACUACGUGCAUAUAUAAAUGAAUGUGUGAGCGUGCGGUAUACGAAUUUAUUUU
.(((((((((..((((((....))))))...)).(((.(.((((.(((((((......))))))).))))).)))....))))))).... ( -23.20)
>consensus
CUGGAUAUUCCUUGGUGUACCAACACCAUUUGAAACCGCUACGUGCAUAUAUAAAUAAAUGUGUGAGCGUGCGGUAUACGAAUUUAUUUU
.(((((.(((..((((((....))))))...)))(((((.((((.(((((((......))))))).)))))))))......))))).... (-20.30 = -20.14 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:42 2006