Locus 4941

Sequence ID 3R_DroMel_CAF1
Location 12,997,143 – 12,997,238
Length 95
Max. P 0.608398
window8086

overview

Window 6

Location 12,997,143 – 12,997,238
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 79.36
Mean single sequence MFE -15.25
Consensus MFE -13.85
Energy contribution -13.97
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -0.31
Structure conservation index 0.91
SVM decision value 0.15
SVM RNA-class probability 0.608398
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12997143 95 + 27905053
AGUAUUUUAAAUAGACAAACAAAAAAUAUACCAUUGAUGGCUCUAAAGUGUGGAGUUUAAAGGCAAGGUACCCUCUUUUAGUGAUCAAUGAUGGA
.(((((((..............)))))))..(((((((.(((..((((.(.(((.(((......))).).))).)))).))).)))))))..... ( -16.34)
>DroSec_CAF1 17452 75 + 1
--------------------CAAAAAUAUACCAUUGAUGGCUCUUAAGUGUGGAGUUUAAAUGCAAGGGUCUCUCUUUUAGUGAUCAAUGAUGGA
--------------------...........(((((((.(((...(((.(.(((.(((.......))).)))).)))..))).)))))))..... ( -14.70)
>DroSim_CAF1 9657 91 + 1
AGUAUUUCAAAAAGAC----AAAAAAUAUACCAUUGAUGGCUCUUAAGUGUGGAGUUUAAAUGCAAGGGUCUCUCUUUUAGUGAUCAAUGAUUGG
................----...........(((((((.(((...(((.(.(((.(((.......))).)))).)))..))).)))))))..... ( -14.70)
>consensus
AGUAUUU_AAA_AGAC____AAAAAAUAUACCAUUGAUGGCUCUUAAGUGUGGAGUUUAAAUGCAAGGGUCUCUCUUUUAGUGAUCAAUGAUGGA
...............................(((((((.(((...(((.(.(((.(((.......))).)))).)))..))).)))))))..... (-13.85 = -13.97 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:35 2006