Locus 494

Sequence ID 3R_DroMel_CAF1
Location 1,870,275 – 1,870,370
Length 95
Max. P 0.500000
window797

overview

Window 7

Location 1,870,275 – 1,870,370
Length 95
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.79
Mean single sequence MFE -28.85
Consensus MFE -12.99
Energy contribution -13.43
Covariance contribution 0.45
Combinations/Pair 1.25
Mean z-score -2.28
Structure conservation index 0.45
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1870275 95 - 27905053
----CGGGGACUUAGAGCCAAUCAAAUGCGGCUCGUGGGGACGGGGGGAAACCGCAGAGAGCAGUCGG-----CCGGCAUCUCUCAAUAAUAAAAGUAAACAAA
----...(..(((((((((..........))))).))))..).(.((....)).).(((((..(((..-----..)))..)))))................... ( -28.40)
>DroSec_CAF1 28278 94 - 1
----CGGGGACUUAGGGGCAAUCAAAUGCGGCUCGUGGGGCCGG-GGGAAACCGCAGGGAGGAGUCGG-----CCGGCAUCUCUCAAUAAUAAAAGUAAACAAA
----.(...((((....((.........(((((.....))))).-((....)))).(((((..(((..-----..)))..)))))........))))...)... ( -29.60)
>DroSim_CAF1 28875 94 - 1
----CGGGGACUUAGGGCCAAUCAAAUGCGGCUCGUGGGGCCGG-GGGAAACCGCAGGGAGGAGUUGG-----CCGGCAUCUCUCAAUAAUAAAAGUAAACAAA
----.(((((.....((((((((...(((((((.....))))..-((....))))).....)).))))-----))....))))).................... ( -29.90)
>DroEre_CAF1 28581 90 - 1
----UGGGGACUUAGAGCCAAUCAAAUACGGCUCGUGGG-CCG--GGAAAACCGCAGAGAGCAGUCGG-----CCGGCAUC--UCAAUAAUAAAAGUAAACAAA
----(((((.....(((((..........)))))((.((-(((--((....))((.....))...)))-----)).)).))--))).................. ( -28.10)
>DroWil_CAF1 22781 84 - 1
----UUACAGCUUAGAGCCAAUCAAACAUGGCUAACGU-------UGGAUGCC--AGACAGACUAUGC-----CAGGCAUC--UCAAUAAUAAAAGUAAACAAA
----((((.......(((((........)))))...((-------((((((((--.(.((.....)).-----).))))))--.)))).......))))..... ( -21.00)
>DroYak_CAF1 34095 100 - 1
CGUCCGUGGAUUUAGAGCCAAUCAAAUACGGCUCGUGGGUCCG--GGGAAACCGCAGAGAGCAGUCGGCUGGGCCGGCAUC--UCAAUAAUAAAAGUAAACAAA
..(((.(((((((((((((..........))))).))))))))--.))).......((((...((((((...)))))).))--))................... ( -36.10)
>consensus
____CGGGGACUUAGAGCCAAUCAAAUACGGCUCGUGGGGCCG__GGGAAACCGCAGAGAGCAGUCGG_____CCGGCAUC__UCAAUAAUAAAAGUAAACAAA
.........((((.(((((..........)))))...........((....))..........(((((.....)))))...............))))....... (-12.99 = -13.43 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:33 2006