| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,989,494 – 12,989,608 |
| Length | 114 |
| Max. P | 0.992805 |
| Location | 12,989,494 – 12,989,608 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.89 |
| Mean single sequence MFE | -35.77 |
| Consensus MFE | -22.83 |
| Energy contribution | -22.80 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.64 |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.992805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12989494 114 - 27905053 GUCACACGCUGCGUAUGAGUAAUGACUGGA-ACUGCUGGCCAAAACGAAAAUC---CUAGCGAACAAU--CGAUGUCCUCAAGGACGUUGCCAAUAUUAAAAAUUUGCUCGAGCGCAGCG ......((((((((.(((((((.((.((..-..((((((..............---))))))..)).)--)(((((((....)))))))...............))))))).)))))))) ( -37.44) >DroVir_CAF1 10141 100 - 1 GUCACACGCUGCGUAUGAGUAAUGGUCUCCGAUUCGUUG------------CA---CUG----GCCAUUGCAAUGUUUUCAAGGACAUUUCCAAUAUUAA-AAGCUGUUCGAGCGCAGCC .......(((((((.((((((((((((..(((....)))------------..---..)----))))))))(((((((....)))))))...........-.......))).))))))). ( -30.20) >DroPse_CAF1 17324 106 - 1 GUCACACGCUGCGUAUGAGUAAUGACUGCCCAGUCC-----------GGUACGGUACGGUCCGGCAGU--CGAUGCUUUCAAGGACGUUGCCAAUAUUAA-AAUCUGCUCGAGCGCAGCG ......((((((((.((((((.((((((((..(.((-----------(........))).).))))))--))..........((......))........-....)))))).)))))))) ( -41.90) >DroEre_CAF1 10317 113 - 1 GUCACACGCUGCGUAUGAGUAAUGACUGGA-ACUGCUGGCCACAGCGAAAAUC---CUAGCGAACAAU--CGAUGUCCUCAAGGACGUUGCCAAUAUUAA-AAUUUGCUCGAGCGCAGCG ......((((((((.(((((((((.(((((-..(((((....)))))....))---).))))......--((((((((....))))))))..........-...))))))).)))))))) ( -42.20) >DroMoj_CAF1 9324 100 - 1 GUCACACGCUGCGUAUGAGUAAUGUUGUCGGAUUCGAUG------------CA---CUG----GUCAUUGCAAUGUUUUCAAGGACAUUUCCAAUAUUAA-AAUCUGUUCAAGCGCAGCG ......((((((((.(((((((((((...(((..((.((------------((---...----.....)))).))..)))..(((....)))))))))).-......)))).)))))))) ( -28.01) >DroAna_CAF1 9930 115 - 1 GUCACACGCUGCGUAUGAGUAAUGACUGCC-ACUGUUGGCCA-GGCGAAAAUGGGAAUGGCGACCAAU--CGAUGCCCUCAAGGACAUUGCCAAUAUUAA-AAUCUACUGGAGCGCAGCG ......((((((((.(.((((......(((-(....))))..-(((........((.(((...))).)--)((((.((....)).)))))))........-....)))).).)))))))) ( -34.90) >consensus GUCACACGCUGCGUAUGAGUAAUGACUGCC_ACUCCUGG________AAAACA___CUGGCGAGCAAU__CGAUGUCCUCAAGGACAUUGCCAAUAUUAA_AAUCUGCUCGAGCGCAGCG ......((((((((.((((((....((((......))))...............................((((((((....))))))))...............)))))).)))))))) (-22.83 = -22.80 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:31 2006