| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,986,230 – 12,986,326 |
| Length | 96 |
| Max. P | 0.681310 |
| Location | 12,986,230 – 12,986,326 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 83.28 |
| Mean single sequence MFE | -19.87 |
| Consensus MFE | -13.99 |
| Energy contribution | -14.13 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12986230 96 + 27905053 UCUUUCGUUUUUC-------GUUGCGGGAUUUUUCGCGCUGUCAAAAUAAAAUUGAUAAUUUAUUGUCAUUCAAUGUGCGAGAGUCCUCUUUUU-CAAUUUUUU .....(((.....-------...)))(((((((.(((((((((((.......))))))....((((.....)))))))))))))))).......-......... ( -20.20) >DroVir_CAF1 6474 94 + 1 UUCCUCU-CUUUU-------GGAGCAGGAUUUUUCGCGUUGUCAAAAUAAAAUUGAUAAUUUAUUGUCAUUCAAUGGAUGAGCGAGUUUUUUUU-UUUUUUU-G .((((((-(....-------.))).))))...(((((((((((((.......))))))))......(((((.....))))))))))........-.......-. ( -21.70) >DroPse_CAF1 14295 87 + 1 UCUUUCGUUUUUC-------GUUGCGGGAUUUUUAGCGCUGUCAAAAUAAAAUUGAUAAUUUAUUGUCAUUCAAUGUGCGAGAGUCCUCUUUUU---------- .....(((.....-------...)))((((((((.((((((((((.......))))))....((((.....)))))))))))))))).......---------- ( -18.10) >DroYak_CAF1 7126 103 + 1 UCUUUCGUUUUUCGUUAUUCGUUGCGGGAUUUUUCGCGCUGUCAAAAUAAAAUUGAUAAUUUAUUGUCAUUCAAUGUGCGAGAGUCCUCUUUUU-CAAUUUUUU .....(((....((.....))..)))(((((((.(((((((((((.......))))))....((((.....)))))))))))))))).......-......... ( -21.00) >DroAna_CAF1 6663 99 + 1 UCUUUCGUUUUUCG-----CGUUGUGGGAUUUUUCGCGCUGUCAAAAUAAAAUUGAUAAUUUAUUGUCAUUCAAUGUGCGAGAGUCCUCUUAUUUUGAUUUUUU ..............-----((..((((((.(((((((((((((((.......))))))....((((.....)))))))))))))...))))))..))....... ( -20.10) >DroPer_CAF1 80226 87 + 1 UCUUUCGUUUUUC-------GUUGCGGGAUUUUUAGCGCUGUCAAAAUAAAAUUGAUAAUUUAUUGUCAUUCAAUGUGCGAGAGUCCUCUUUUU---------- .....(((.....-------...)))((((((((.((((((((((.......))))))....((((.....)))))))))))))))).......---------- ( -18.10) >consensus UCUUUCGUUUUUC_______GUUGCGGGAUUUUUCGCGCUGUCAAAAUAAAAUUGAUAAUUUAUUGUCAUUCAAUGUGCGAGAGUCCUCUUUUU___AUUUU_U .........................(((..(((((((((((((((.......))))))....((((.....)))))))))))))..)))............... (-13.99 = -14.13 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:28 2006