Locus 4935

Sequence ID 3R_DroMel_CAF1
Location 12,979,245 – 12,979,341
Length 96
Max. P 0.529837
window8077

overview

Window 7

Location 12,979,245 – 12,979,341
Length 96
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.13
Mean single sequence MFE -33.93
Consensus MFE -19.26
Energy contribution -18.15
Covariance contribution -1.11
Combinations/Pair 1.37
Mean z-score -1.76
Structure conservation index 0.57
SVM decision value -0.01
SVM RNA-class probability 0.529837
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12979245 96 - 27905053
CAAGCUGCCCAACUGCACGCCCACCACCUACAAUGUGGGCGGAAACGUGCCGCUGGAGUGGCUCAACAUUGGCCAUAGACGCCGCAGCAUGCGCAU---
...((((((((.(.((((((((((..........))))))(....))))).).))).(((((.((....))))))).......)))))........--- ( -39.20)
>DroVir_CAF1 2 99 - 1
AAAGCUAACCAGCUGCACCCCAGCCACAUACAAUGUGGGCGAUAGUGUGCCGCUGGAGUGGGUCAACAUUGGCCACAGACGUCGCAAUCUUCGCAUCUA
...((...(((((.(((((...(((.(((.....))))))....).)))).))))).((((.(((....))))))).......)).............. ( -31.00)
>DroGri_CAF1 2 99 - 1
AAAAUUGACGAGCUGCAUCCCAGCCACAUACAAUGUGGGCGAGAGUGUGCCGCUGGAGUGGGUGAACAUUGGACACAGACGUCGCAGUCUGCGCAUUUA
.....((.((((((((...((((((((((...)))))((((......)))))))))((((......)))).(((......))))))).)).)))).... ( -29.80)
>DroEre_CAF1 2 99 - 1
CAAGCUGCUCAACUGCAGUCCCACCACCUACAAUGUGGGCGGAAACGUGCCGCUGGAGUGGCUCAACAUUGGCCAUAGACGCCGCAGCAUGCGCAUUUA
...(((((...(((.((((....((((.......))))(((....)))...)))).)))(((.((....))))).........)))))........... ( -31.90)
>DroWil_CAF1 2 99 - 1
GAAACUAGUGAACUGCACACCUACCGCCUACAAUGUGGGCGGUAAUGUGCCACUGGAGUGGCUAAAUCUUGGUCACAGACGUCGCAAUCUUCGCAUUUG
....((((((....(((((..((((((((((...)))))))))).))))))))))).(((((((.....))))))).......((.......))..... ( -38.60)
>DroAna_CAF1 2 99 - 1
GAAGCUGCUCAACUGCACUCCAACCACCUACAACGUGGGUGGCAACGUGCCGUUGGAGUGGAUCAACAUUGGCCAUAGACGCCGCAACCUGCGCAUUUA
...((.((.....(((((((((((.((((((...))))))(((.....)))))))))))...........(((.......))))))....))))..... ( -33.10)
>consensus
AAAGCUGCCCAACUGCACCCCAACCACCUACAAUGUGGGCGGAAACGUGCCGCUGGAGUGGCUCAACAUUGGCCACAGACGCCGCAACCUGCGCAUUUA
.............(((.......((((.......))))((((....((((((.((...........)).))).))).....)))).......))).... (-19.26 = -18.15 +  -1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:27 2006