Locus 4931

Sequence ID 3R_DroMel_CAF1
Location 12,965,314 – 12,965,434
Length 120
Max. P 0.571238
window8067

overview

Window 7

Location 12,965,314 – 12,965,434
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.00
Mean single sequence MFE -36.42
Consensus MFE -29.68
Energy contribution -29.80
Covariance contribution 0.12
Combinations/Pair 1.06
Mean z-score -1.41
Structure conservation index 0.82
SVM decision value 0.08
SVM RNA-class probability 0.571238
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12965314 120 + 27905053
GACUUGGUGCACGCCAAAAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGCUGGACAACAGUCAGUUUGGAAAGGUUUUCGGCACAUGCCGGAUACCGAGAAGGUUUACCGACGAUAUC
...((((((...(((.......((((..((((........))))((((..((((.....))))..)))))))).(((.((((((....)))))).))).....))).))))))....... ( -35.20)
>DroSec_CAF1 5343 120 + 1
GACUUGGUGCACGCCAAGAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGUUGGACAACAGUCAGUUUGGCAAAGUUUUCGGCACAUGCCGGAUACCGAGAAGGGGUACCGACGAUAUC
..(((((((...((((((..((((((((((((..............)).))))))).....)))..))))))......((((((....)))))))))))))..((....))......... ( -34.74)
>DroSim_CAF1 5547 120 + 1
GACUUGGUGCAGGCCAAGAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGUUGGACAACAGUCAGUUUGGCAAAGUUUUCGGCACAUGCCGGAUACCGAGAAGGGGUACCGACGAUAUC
..(((((((...((((((..((((((((((((..............)).))))))).....)))..))))))......((((((....)))))))))))))..((....))......... ( -34.44)
>DroEre_CAF1 5321 120 + 1
GAUUUGGUGCACGCCAAAAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGUUGGACAACAGUCAGUUUGGCAAGGUGUUCGGCACUUGCCGGAUACCGAAAAGGUUCACGGACGACAUC
..((((((....)))))).....((((.((((........))))((((..((..(((........)))..))..((((((((((....))))))))))......)))).))))....... ( -41.10)
>DroYak_CAF1 5483 120 + 1
GACUUGGUGCACGCCAAGAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGUUGGACAACAGUCAGUUUGGCAAAGUGUUCGGCACAUGCCGGAUACCGAAAAGGUUUACGGACGACAUC
..((((((....)))))).....((((.((((........))))((((..((..(((........)))..))...(((((((((....))))))))).......)))).))))....... ( -36.60)
>consensus
GACUUGGUGCACGCCAAGAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGUUGGACAACAGUCAGUUUGGCAAAGUUUUCGGCACAUGCCGGAUACCGAGAAGGUUUACCGACGAUAUC
..(((((((...((((((..((((((((((((..............)).))))))).....)))..))))))......((((((....)))))))))))))................... (-29.68 = -29.80 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:17 2006