| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,955,213 – 12,955,318 |
| Length | 105 |
| Max. P | 0.798469 |
| Location | 12,955,213 – 12,955,318 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 78.14 |
| Mean single sequence MFE | -31.47 |
| Consensus MFE | -18.59 |
| Energy contribution | -18.53 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.798469 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12955213 105 + 27905053 CUCAGCAUAUCGUCGUCCCCUUGGAU---CACAGGCUGGGAUAGUUACUGGCAUAGCAGUGACAGUUGCUACAUGGUCCCGAGAUCAUGCUUCUGAUCCAUUCCAGAU ...((((.......(((((((((...---..))))..))))).(((((((......)))))))...)))).(((((((....)))))))..((((........)))). ( -32.00) >DroPse_CAF1 50076 84 + 1 ---------------------UUCAU---CACAGACUGGGAUAGUUGCUGGCAUAGCAGUGGCAGGUCUUGCAGGGUCCGUUUAUCGUGGAUCGAAUCCAGUCCGAGU ---------------------.....---..(.(((((((...((..(((......)))..))...........((((((.......))))))...))))))).)... ( -25.50) >DroSec_CAF1 51959 102 + 1 CUCAGCAUAUCG---UCCCCUUGGAU---CACAGAUUAGGAUAGUUACUAGCAUAGCAGUGACAGUUGCUACAUGGUCCCGAGAUCAUGCUCCUGAUCCAUUCCAGAU ............---.....(((((.---....((((((((..((((((.((...))))))))........(((((((....))))))).))))))))...))))).. ( -28.30) >DroSim_CAF1 51330 102 + 1 CUCAGCAUAUCG---UCCUCUUGGAU---CACAGGUUUGGAUAGUUACUGGCAUAGCAGUGACAUUUGCUACAUGGUCCCGAGAUCAUGCUUCUGAUCCAUUCCAGAU ...((((....(---(((.((((...---..))))...)))).(((((((......)))))))...)))).(((((((....)))))))..((((........)))). ( -30.20) >DroEre_CAF1 45075 102 + 1 CUCAGCUUAUUG---UCCUCUGGGAU---CACAGAUUAGGAUAGUUACUGGCGUAGCAGUGGCAGUUGCUACAUGGUCCCGAGGUCAUGCUCCUAAUCCAUUCCAGAU ............---...((((((((---....((((((((((((.((((.((......)).)))).))))((((..(....)..)))).)))))))).)))))))). ( -34.20) >DroYak_CAF1 43397 105 + 1 CUCAGCUUAUUG---UGUUCUGGGAUGAUAACAGGUUAGGAUAGUUACUGGCGUAGCAGUGACAGUUGCUGCAUGGUCCCGAGGUCAUGCUCCUGAUCCAUUCCAGAU ............---...(((((((((......((((((((..(((((((......))))))).......(((((..(....)..)))))))))))))))))))))). ( -38.60) >consensus CUCAGCAUAUCG___UCCUCUUGGAU___CACAGAUUAGGAUAGUUACUGGCAUAGCAGUGACAGUUGCUACAUGGUCCCGAGAUCAUGCUCCUGAUCCAUUCCAGAU .................................((((((((..(((((((......)))))))........(((((((....))))))).)))))))).......... (-18.59 = -18.53 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:15 2006