| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,950,300 – 12,950,420 |
| Length | 120 |
| Max. P | 0.630588 |
| Location | 12,950,300 – 12,950,420 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.83 |
| Mean single sequence MFE | -33.89 |
| Consensus MFE | -17.50 |
| Energy contribution | -19.54 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12950300 120 + 27905053 CCAUACUCAUCAUCUUGGGUUCCGUACGGAGAUUCUACCACAUCGUAUCCCUACUGGGAGGAUACUACAACAUCUGCACCUGUUGCUUCGUCAACUUCCAGGUCUCCAUGUGAUGGAAAA ......(((((((..((((..((..((((((.............((((((((....)).))))))..(((((........))))))))))).........))..)))).))))))).... ( -29.90) >DroPse_CAF1 45825 113 + 1 CCCUACCGGUA--CCGGCACCACUAGCGGUACCUAUACCACGACUUAUGGCUGGACAGAUGACGCCACAACGUUAGCCCCAGCAGCUUCACCCCCGUCCAACCC---UUGCGGCGGCU-- .......((((--(((.(.......))))))))................(((((.....(((((......)))))...)))))..........(((((((....---.)).)))))..-- ( -30.40) >DroSec_CAF1 47113 120 + 1 CCAUACUCAUCAUCUUGGGUUGCUUACGGAGAUUCUACCACUUCGUAUCCCUACGGGGAGGAUGCAACUAUAUCUGCACCUGUUGCUCCGUCAACUUCCAGGUCUCCAUGUGAUGGAAAA ((((.(.(((...((((((((((.(((((((.........)))))))((((....))))(((.(((((.............))))))))).))))..))))).....))).))))).... ( -36.82) >DroSim_CAF1 46535 120 + 1 CCAUACUCAUCAUCUUGGGUUGCUUACGGAGAUUCUACCACUUCGUAUCCCUACGGGGAGGAUGCAACUACAUCUGCACCUGUUGCUCCGUCAACUUCCAGGCCUCCAUGUGAUGGAAAA ......(((((((((((((((((.(((((((.........)))))))((((....))))(((.(((((.............))))))))).))))..))))).......))))))).... ( -36.33) >DroYak_CAF1 38593 120 + 1 CCAUAUUCAUCUUCUUGGGUGCCUUACGGGGACUCUACCACCUCGUAUCCCUACUGGGAGGAUACUACUACAUCUGCACCUGUUGCUCCGUCAACUGCUAGGCCCCCAUGUGAUGGACAA .....((((((....((((.(((((((((((.........)))))))((((....))))((((........))))(((...((((......))))))).)))).))))...))))))... ( -36.00) >consensus CCAUACUCAUCAUCUUGGGUUCCUUACGGAGAUUCUACCACUUCGUAUCCCUACGGGGAGGAUGCAACUACAUCUGCACCUGUUGCUCCGUCAACUUCCAGGCCUCCAUGUGAUGGAAAA ((((...(((...((((((......((((((................((((....))))(((((......)))))..........)))))).....)))))).....)))..)))).... (-17.50 = -19.54 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:12 2006