| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,910,291 – 12,910,390 |
| Length | 99 |
| Max. P | 0.976557 |
| Location | 12,910,291 – 12,910,390 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.25 |
| Mean single sequence MFE | -38.97 |
| Consensus MFE | -24.73 |
| Energy contribution | -24.73 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.976557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12910291 99 + 27905053 -----------------CACCGUUCUGUCACAGAUUCCUUGCUGGUUGUCUCCUCGCGAACUCCCGGGUCGCAGACAACCACCGACGAAUCUGACGAUCUGU----ACCCAGGCAAAAGU -----------------........((((.(((((((.(((.(((((((((....((((.((....))))))))))))))).))).)))))))((.....))----.....))))..... ( -33.20) >DroEre_CAF1 27480 119 + 1 ACCAGAUCGCCGUCGGCCAGCAAUCUGGCAAAGAUUUCUUGCUGGUUGGCUCCUAGCAAACUCCCGGGUCGGAGUCAACCACCGACGAAUCUGAUGAUCUGUACGUACCCAGGCAA-AGU ..(((((((.(....(((((....)))))..((((((.(((.(((((((((((......(((....))).))))))))))).))).))))))).)))))))...............-... ( -41.50) >DroYak_CAF1 28526 114 + 1 ACCAG-UCGCCGGCGUACACCAAGCUGGCACAGAUUCCUUGCUGGUUGGCUCAUCACGAACUCCCGGGUCGCAGUCAACCACCGACGAAUCUGAUGAUCUGU----ACCCAGGCAA-AGU ....(-((((((((.........)))))).(((((((.(((.(((((((((((((.((......))))).).))))))))).))).))))))).........----.....)))..-... ( -42.20) >consensus ACCAG_UCGCCG_CG__CACCAAUCUGGCACAGAUUCCUUGCUGGUUGGCUCCUCGCGAACUCCCGGGUCGCAGUCAACCACCGACGAAUCUGAUGAUCUGU____ACCCAGGCAA_AGU ..............................(((((((.(((.(((((((((.....(((.((....))))).))))))))).))).)))))))..(.((((........)))))...... (-24.73 = -24.73 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:02 2006